miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTAATATCGGACAACCATTGT

selected species: Homo sapiens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM494810_Normal_2 TTAATATCGGACAACCATTGT AATGGCTGTCCGTAGTATGGTC down 6 1


Secondary structure

TGGTGCTTAAAGAATGGCTGTCCGTAGTATGGTCTCTATATTTATGATGATTAATATCGGACAACCATTGTTTTAGTATC
--------------------------------------------------TTAATATCGGACAACCATTGTT 	10
--------------------------------------------------TTAATATCGGACAACCATTGT 	165
--------------------------------------------------TTAATATCGGACAACCATT 	3
--------------------------------------------------TTAATATCGGACAACCATTGTTT 	1


Overlaps with miRBase pre-miRNAs: ggo-mir-889
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494811_K562 TTAATATCGGACAACCATTGT AATGGCTGTCCGTAGTATGGTC down 6 1


Secondary structure

TGGTGCTTAAAGAATGGCTGTCCGTAGTATGGTCTCTATATTTATGATGATTAATATCGGACAACCATTGTTTTAGTATC
--------------------------------------------------TTAATATCGGACAACCATTGT 	24
--------------------------------------------------TTAATATCGGACAACCATTGTTT 	1
----------------------------------------------------AATATCGGACAACCATTGT 	1


Overlaps with miRBase pre-miRNAs: ggo-mir-889
HuntMi prediction: true miRNA