miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTAATCAAGGAAATCACGGTCG

selected species: Glycine max

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Glycine max	GSM543396	TTAATCAAGGAAATCACGGTCG	ACCGTGTTTCCTTGGTTAACG	up	0	1

Secondary structure

TAGTTGCAAACAAGTAGCTGTTTTTGATTCACTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGTTTCCTTGGTTAACGATATGTGCTGGATCATAGGTTATACGTTCGCTGAACAA
-----------------------------------------TTAATCAAGGAAATCACGGTCG 	8913
-----------------------------------------TTAATCAAGGAAATCACGGTC 	52
-----------------------------------------TTAATCAAGGAAATCACGG 	402
------------------------------------------TAATCAAGGAAATCACGGTCG 	24

Overlaps with: MNEST040638
Overlaps with miRBase pre-miRNAs: gma-MIR1509a gso-MIR1509a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Glycine max	GSM543394	TTAATCAAGGAAATCACGGTCG	ACCGTGTTTCCTTGGTTAACG	up	0	1

Secondary structure

TAGTTGCAAACAAGTAGCTGTTTTTGATTCACTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGTTTCCTTGGTTAACGATATGTGCTGGATCATAGGTTATACGTTCGCTGAACAA
----------------------------------------CTTAATCAAGGAAATCACGGTCG 	7
-----------------------------------------TTAATCAAGGAAATCACGGTCG 	26631
-----------------------------------------TTAATCAAGGAAATCACGGTC 	54
-----------------------------------------TTAATCAAGGAAATCACGGT 	7
-----------------------------------------TTAATCAAGGAAATCACGG 	1117
------------------------------------------TAATCAAGGAAATCACGGTCG 	176
-------------------------------------------AATCAAGGAAATCACGGTCG 	19
---------------------------------------------------------------------------------------------------------------CGACCGTGTTTCCTTGGTTAA 	7
-----------------------------------------------------------------------------------------------------------------ACCGTGTTTCCTTGGTTAACG 	6

Overlaps with: MNEST040638
Overlaps with miRBase pre-miRNAs: gma-MIR1509a gso-MIR1509a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Glycine max	GSM543393	TTAATCAAGGAAATCACGGTCG	ACCGTGTTTCCTTGGTTAACG	up	0	1

Secondary structure

TAGTTGCAAACAAGTAGCTGTTTTTGATTCACTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGTTTCCTTGGTTAACGATATGTGCTGGATCATAGGTTATACGTTCGCTGAACAA
----------------------------------------CTTAATCAAGGAAATCACGGTCG 	9
-----------------------------------------TTAATCAAGGAAATCACGGTCG 	26946
-----------------------------------------TTAATCAAGGAAATCACGGTC 	59
-----------------------------------------TTAATCAAGGAAATCACGGT 	9
-----------------------------------------TTAATCAAGGAAATCACGG 	1011
------------------------------------------TAATCAAGGAAATCACGGTCG 	141
-------------------------------------------AATCAAGGAAATCACGGTCG 	10
---------------------------------------------------------------------------------------------------------------CGACCGTGTTTCCTTGGTTAA 	9

Overlaps with: MNEST040638
Overlaps with miRBase pre-miRNAs: gma-MIR1509a gso-MIR1509a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Glycine max	GSM543395	TTAATCAAGGAAATCACGGTCG	ACCGTGTTTCCTTGGTTAACG	up	0	1

Secondary structure

TAGTTGCAAACAAGTAGCTGTTTTTGATTCACTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGTTTCCTTGGTTAACGATATGTGCTGGATCATAGGTTATACGTTCGCTGAACAA
----------------------------------------CTTAATCAAGGAAATCACGGTCG 	39
-----------------------------------------TTAATCAAGGAAATCACGGTCG 	34794
-----------------------------------------TTAATCAAGGAAATCACGGTC 	59
-----------------------------------------TTAATCAAGGAAATCACGGT 	18
-----------------------------------------TTAATCAAGGAAATCACGG 	1936
------------------------------------------TAATCAAGGAAATCACGGTCG 	52
-------------------------------------------AATCAAGGAAATCACGGTCGCG 	10
-------------------------------------------AATCAAGGAAATCACGGTCG 	14

Overlaps with: MNEST040638
Overlaps with miRBase pre-miRNAs: gma-MIR1509a gso-MIR1509a
HuntMi prediction: true miRNA