miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTACAGAAAGCGTGTGTGTG

selected species: Ciona intestinalis



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343283-14443 TTACAGAAAGCGTGTGTGTGCT CTACGCAGACTTTCTGTACTG down 4 1


Secondary structure

AAATCAGAGCGTTTAGTGTTTGCTACGCAGACTTTCTGTACTGTAATTTGAAACATTACAGAAAGCGTGTGTGTGCTAAAACTGCGCTTATTATCT
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGCTA 	2
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGCT 	1203
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGC 	350
-------------------------------------------------------TTACAGAAAGCGTGTGTGTG 	483
-------------------------------------------------------TTACAGAAAGCGTGTGTGT 	9
--------------------------------------------------------TACAGAAAGCGTGTGTGTGCT 	10
--------------------------------------------------------TACAGAAAGCGTGTGTGTG 	2
---------------------------------------------------------ACAGAAAGCGTGTGTGTGCT 	2


Overlaps with: MNEST024984 MNEST024985
Overlaps with miRBase pre-miRNAs: cin-mir-4014-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343283-14443 TTACAGAAAGCGTGTGTGTGCT CACCACGAGCTTTTTGGAATG down 2 1


Secondary structure

AACTGCCTTCAGCACCACGAGCTTTTTGGAATGTTAACGTTCATTACAGAAAGCGTGTGTGTGCTAAAGTTAGT
-----------GCACCACGAGCTTTTTGGAATG 	47
-----------GCACCACGAGCTTTTTGGAAT 	2
-----------GCACCACGAGCTTTTTGGA 	12
------------CACCACGAGCTTTTTGGAATG 	1
-------------------------------------------TTACAGAAAGCGTGTGTGTGCTA 	2
-------------------------------------------TTACAGAAAGCGTGTGTGTGCT 	1203
-------------------------------------------TTACAGAAAGCGTGTGTGTGC 	350
-------------------------------------------TTACAGAAAGCGTGTGTGTG 	483
-------------------------------------------TTACAGAAAGCGTGTGTGT 	9
--------------------------------------------TACAGAAAGCGTGTGTGTGCT 	10
--------------------------------------------TACAGAAAGCGTGTGTGTG 	2
---------------------------------------------ACAGAAAGCGTGTGTGTGCT 	2


Overlaps with: MNEST024986 MNEST024987
Overlaps with miRBase pre-miRNAs: cin-mir-4014-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Ciona intestinalis GSM343284-14444 TTACAGAAAGCGTGTGTGTGCT CTACGCAGACTTTCTGTACTG down 4 1


Secondary structure

AAATCAGAGCGTTTAGTGTTTGCTACGCAGACTTTCTGTACTGTAATTTGAAACATTACAGAAAGCGTGTGTGTGCTAAAACTGCGCTTATTATCT
------------------------------------------------------ATTACAGAAAGCGTGTGTGTGC 	1
------------------------------------------------------ATTACAGAAAGCGTGTGTGTG 	2
------------------------------------------------------ATTACAGAAAGCGTGTGTG 	2
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGCTA 	7
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGCT 	11835
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGC 	292
-------------------------------------------------------TTACAGAAAGCGTGTGTGTG 	4619
-------------------------------------------------------TTACAGAAAGCGTGTGTGT 	70
--------------------------------------------------------TACAGAAAGCGTGTGTGTGCTA 	4
--------------------------------------------------------TACAGAAAGCGTGTGTGTGCT 	45
--------------------------------------------------------TACAGAAAGCGTGTGTGTGC 	1
--------------------------------------------------------TACAGAAAGCGTGTGTGTG 	8
---------------------------------------------------------ACAGAAAGCGTGTGTGTGCT 	1
----------------------------------------------------------CAGAAAGCGTGTGTGTGCTA 	1
----------------------------------------------------------CAGAAAGCGTGTGTGTGCT 	2
-----------------------------------------------------------AGAAAGCGTGTGTGTGCTA 	1


Overlaps with: MNEST024984 MNEST024985
Overlaps with miRBase pre-miRNAs: cin-mir-4014-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Ciona intestinalis GSM343284-14444 TTACAGAAAGCGTGTGTGTGCT CACCACGAGCTTTTTGGAATG down 2 1


Secondary structure

AACTGCCTTCAGCACCACGAGCTTTTTGGAATGTTAACGTTCATTACAGAAAGCGTGTGTGTGCTAAAGTTAGT
-----------GCACCACGAGCTTTTTGGAATG 	73
-----------GCACCACGAGCTTTTTGGAA 	1
-----------GCACCACGAGCTTTTTGGA 	33
------------------------------------------ATTACAGAAAGCGTGTGTGTGC 	1
------------------------------------------ATTACAGAAAGCGTGTGTGTG 	2
------------------------------------------ATTACAGAAAGCGTGTGTG 	2
-------------------------------------------TTACAGAAAGCGTGTGTGTGCTA 	7
-------------------------------------------TTACAGAAAGCGTGTGTGTGCT 	11835
-------------------------------------------TTACAGAAAGCGTGTGTGTGC 	292
-------------------------------------------TTACAGAAAGCGTGTGTGTG 	4619
-------------------------------------------TTACAGAAAGCGTGTGTGT 	70
--------------------------------------------TACAGAAAGCGTGTGTGTGCTA 	4
--------------------------------------------TACAGAAAGCGTGTGTGTGCT 	45
--------------------------------------------TACAGAAAGCGTGTGTGTGC 	1
--------------------------------------------TACAGAAAGCGTGTGTGTG 	8
---------------------------------------------ACAGAAAGCGTGTGTGTGCT 	1
----------------------------------------------CAGAAAGCGTGTGTGTGCTA 	1
----------------------------------------------CAGAAAGCGTGTGTGTGCT 	2
-----------------------------------------------AGAAAGCGTGTGTGTGCTA 	1


Overlaps with: MNEST024986 MNEST024987
Overlaps with miRBase pre-miRNAs: cin-mir-4014-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Ciona intestinalis GSM343286 TTACAGAAAGCGTGTGTGTG ACGCAGACTTTCTGTACTG down 4 0


Secondary structure

ATCAGAGCGTTTAGTGTTTGCTACGCAGACTTTCTGTACTGTAATTTGAAACATTACAGAAAGCGTGTGTGTGCTAAAACTGCGCTTATTAT
-----------------------------------------------------TTACAGAAAGCGTGTGTGTG 	1667
-----------------------------------------------------TTACAGAAAGCGTGTGTGT 	20
------------------------------------------------------TACAGAAAGCGTGTGTGTGC 	3
--------------------------------------------------------CAGAAAGCGTGTGTGTGCTA 	1


Overlaps with: MNEST024984 MNEST024985
Overlaps with miRBase pre-miRNAs: cin-mir-4014-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Ciona intestinalis GSM343286 TTACAGAAAGCGTGTGTGTG CCACGAGCTTTTTGGAATG down 2 1


Secondary structure

AATTATGTAACTGCCTTCAGCACCACGAGCTTTTTGGAATGTTAACGTTCATTACAGAAAGCGTGTGTGTGCTAAAGTTAGTGATCGCAA
-------------------GCACCACGAGCTTTTTGGAA 	16
---------------------------------------------------TTACAGAAAGCGTGTGTGTG 	1667
---------------------------------------------------TTACAGAAAGCGTGTGTGT 	20
----------------------------------------------------TACAGAAAGCGTGTGTGTGC 	3
------------------------------------------------------CAGAAAGCGTGTGTGTGCTA 	1


Overlaps with: MNEST024986 MNEST024987
Overlaps with miRBase pre-miRNAs: cin-mir-4014-2
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Ciona intestinalis GSM343285 TTACAGAAAGCGTGTGTGTGCT CTACGCAGACTTTCTGTACTG down 4 1


Secondary structure

AAATCAGAGCGTTTAGTGTTTGCTACGCAGACTTTCTGTACTGTAATTTGAAACATTACAGAAAGCGTGTGTGTGCTAAAACTGCGCTTATTATCT
------------------------------------------------------ATTACAGAAAGCGTGTGTGTG 	1
------------------------------------------------------ATTACAGAAAGCGTGTGTGT 	1
------------------------------------------------------ATTACAGAAAGCGTGTGTG 	1
-------------------------------------------------------TTACAGAAAGCGTGTGTGTG 	2617
-------------------------------------------------------TTACAGAAAGCGTGTGTGT 	68
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGCT 	5484
-------------------------------------------------------TTACAGAAAGCGTGTGTGTGC 	140
--------------------------------------------------------TACAGAAAGCGTGTGTGTGCTA 	2
--------------------------------------------------------TACAGAAAGCGTGTGTGTGCT 	12
--------------------------------------------------------TACAGAAAGCGTGTGTGTGC 	2
--------------------------------------------------------TACAGAAAGCGTGTGTGTG 	3
---------------------------------------------------------ACAGAAAGCGTGTGTGTGCT 	4


Overlaps with: MNEST024984 MNEST024985
Overlaps with miRBase pre-miRNAs: cin-mir-4014-1
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Ciona intestinalis GSM343285 TTACAGAAAGCGTGTGTGTGCT CACCACGAGCTTTTTGGAATG down 2 1


Secondary structure

AACTGCCTTCAGCACCACGAGCTTTTTGGAATGTTAACGTTCATTACAGAAAGCGTGTGTGTGCTAAAGTTAGT
-----------GCACCACGAGCTTTTTGGA 	1
------------------------------------------ATTACAGAAAGCGTGTGTGTG 	1
------------------------------------------ATTACAGAAAGCGTGTGTGT 	1
------------------------------------------ATTACAGAAAGCGTGTGTG 	1
-------------------------------------------TTACAGAAAGCGTGTGTGTG 	2617
-------------------------------------------TTACAGAAAGCGTGTGTGT 	68
-------------------------------------------TTACAGAAAGCGTGTGTGTGCT 	5484
-------------------------------------------TTACAGAAAGCGTGTGTGTGC 	140
--------------------------------------------TACAGAAAGCGTGTGTGTGCTA 	2
--------------------------------------------TACAGAAAGCGTGTGTGTGCT 	12
--------------------------------------------TACAGAAAGCGTGTGTGTGC 	2
--------------------------------------------TACAGAAAGCGTGTGTGTG 	3
---------------------------------------------ACAGAAAGCGTGTGTGTGCT 	4


Overlaps with: MNEST024986 MNEST024987
Overlaps with miRBase pre-miRNAs: cin-mir-4014-2
HuntMi prediction: true miRNA