miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTACTGGACATTGTAAGAACGG

selected species: Acyrthosiphon pisum



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TTACTGGACATTGTAAGAACGG GTTCTTACAATGTCTGGTAAAA down 0 0


Secondary structure

ACGATTAGGGCCGTTCTTACAATGTCTGGTAAAAGTTAACCAACACTTAACCGGACAAATTCTGCAGGTATTAAAATCTGTTATAAGTCGGTTAGCGTTAACCGACACTTTACTGGACATTGTAAGAACGGCCGTGAATA
----------------------------------------------------------------------------TCTGTTATAAGTCGGTTAGCGTTAAC 	1
-------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGG 	12
-------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGGCCGT 	1
--------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGGCCGTG 	2
--------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGG 	1
-------------------------------------------------------------------------------------------------------------------GACATTGTAAGAACGGCCGTGAATA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Acyrthosiphon pisum GSM502519_unique_quant TTACTGGACATTGTAAGAACGG GTTCTTACAATGTCCGGTTAAAG down 0 1


Secondary structure

CTTAAAAGCCACGCTCAGGGCCGTTCTTACAATGTCCGGTTAAAGTTAACCGACACTTAACCGGTCGAATTCTGCTGGTAATAAAATCTGTTATCAGTCGGTTAGTGTTAACCGACACTTTACTGGACATTGTAAGAACGGCCCTTAGTTAGTTTTAAGA
-----------------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGG 	12
-----------------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGGCCCT 	1
------------------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGG 	1
-------------------------------------------------------------------------------------------------------------------------ACTGGACATTGTAAGAACGGCCCTTA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Acyrthosiphon pisum GSM502519_unique_quant TTACTGGACATTGTAAGAACGG GTTCTTGTAATGTCTGGTAAAA down 0 0


Secondary structure

ACTGGACTTATTAAACTTGGAGAAATATACATGATTAGGGCCGTTCTTGTAATGTCTGGTAAAAGTTAACCAACACTTAACCGGACGAGTTCTGCAGGTATTAAAATCTGTTATAAGTCGGTTAGCGTTAACAAACACTTTACTGGACATTGTAAGAACGGCCCTTAATATTTAATATAAATTTGATATATAATAAAAAT
----------------------------------------------------------------------------------------------------------TCTGTTATAAGTCGGTTAGCGTTAAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGG 	12
-------------------------------------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGGCCCT 	1
--------------------------------------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGG 	1
---------------------------------------------------------------------------------------------------------------------------------------------ACTGGACATTGTAAGAACGGCCCTTA 	1
------------------------------------------------------------------------------------------------------------------------------------------------GGACATTGTAAGAACGGCCCTTAATA 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Acyrthosiphon pisum GSM502519_unique_quant TTACTGGACATTGTAAGAACGG GTTCTTACAATGTCTGGTAAAA down 0 0


Secondary structure

TGAATATATCACACTTAGGGCCGTTCTTACAATGTCTGGTAAAAGCTGACCAACACTTAACTGGCCGGATTCTGCAGGTATTAAAATCTGTTATAAGTCGTTTGGTGTTAACCGACACTTTACTGGACATTGTAAGAACGGCTCTAAAATAACTGAAAAA
-----------------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGG 	12
------------------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGG 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Acyrthosiphon pisum GSM502519_unique_quant TTACTGGACATTGTAAGAACGG GTTCTTACAATGTTTGGTAAAA down 0 0


Secondary structure

ACGATTAGGGCCGTTCTTACAATGTTTGGTAAAAGTTAACCAACACTTAACCGGACGAATTCTGCAGGTATTAAAATCTGTTATAAGTCGGTTAGCGTTAACCGACACTTTACTGGACATTGTAAGAACGGCCGTGAATA
----------------------------------------------------------------------------TCTGTTATAAGTCGGTTAGCGTTAAC 	1
-------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGG 	12
-------------------------------------------------------------------------------------------------------------TTACTGGACATTGTAAGAACGGCCGT 	1
--------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGGCCGTG 	2
--------------------------------------------------------------------------------------------------------------TACTGGACATTGTAAGAACGG 	1
-------------------------------------------------------------------------------------------------------------------GACATTGTAAGAACGGCCGTGAATA 	1


HuntMi prediction: true miRNA