miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTAGAATAGGGGAGCTTAACTT

selected species: Drosophila melanogaster

11 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Drosophila melanogaster	GSM399107-16288	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
--CATATTGGTCCAACTTGCC 	1
---------------------TTAGAATAGGGGAGCTTAACT 	80
---------------------TTAGAATAGGGGAGCTTAA 	3
---------------------TTAGAATAGGGGAGCTTAACTT 	152
---------------------TTAGAATAGGGGAGCTTAAC 	3
----------------------TAGAATAGGGGAGCTTAACTTA 	15
----------------------TAGAATAGGGGAGCTTAACT 	20
----------------------TAGAATAGGGGAGCTTAACTT 	71
----------------------TAGAATAGGGGAGCTTAACTTAT 	1
----------------------TAGAATAGGGGAGCTTAAC 	2
------------------------GAATAGGGGAGCTTAACTT 	1
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAAG 	6
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCT 	2
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAA 	3
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTA 	5
------------------------------------------------------------GTTAAAAGCCTCTGTTCTA 	1
------------------------------------------------------------GTTAAAAGCCTCTGTTCTAAG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Drosophila melanogaster	GSM466487_wt_total	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	4
---------------------TTAGAATAGGGGAGCTTAACTT 	5
----------------------TAGAATAGGGGAGCTTAACTTA 	1
----------------------TAGAATAGGGGAGCTTAACT 	1
----------------------TAGAATAGGGGAGCTTAACTT 	2
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Drosophila melanogaster	GSM360262-14327	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	11
---------------------TTAGAATAGGGGAGCTTAA 	1
---------------------TTAGAATAGGGGAGCTTAACTT 	42
----------------------TAGAATAGGGGAGCTTAACTTA 	1
----------------------TAGAATAGGGGAGCTTAACT 	4
----------------------TAGAATAGGGGAGCTTAACTT 	15
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAAG 	1
-------------------------------------------------------------TTAAAAGCCTCTGTTCTAAGA 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Drosophila melanogaster	GSM385822-16273	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	1
---------------------TTAGAATAGGGGAGCTTAACTT 	5

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Drosophila melanogaster	GSM286605-9793	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	4
---------------------TTAGAATAGGGGAGCTTAACTT 	14
----------------------TAGAATAGGGGAGCTTAACTTA 	2
----------------------TAGAATAGGGGAGCTTAACT 	7
----------------------TAGAATAGGGGAGCTTAACTT 	2
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAAG 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Drosophila melanogaster	GSM360260-14326	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	3
---------------------TTAGAATAGGGGAGCTTAACTT 	19
---------------------TTAGAATAGGGGAGCTTAAC 	1
----------------------TAGAATAGGGGAGCTTAACTTA 	1
----------------------TAGAATAGGGGAGCTTAACT 	1
----------------------TAGAATAGGGGAGCTTAACTT 	4
------------------------------------------------------------GTTAAAAGCCTCTGTTCTAAG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Drosophila melanogaster	GSM322543-14323	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	19
---------------------TTAGAATAGGGGAGCTTAACTT 	21
---------------------TTAGAATAGGGGAGCTTAAC 	2
----------------------TAGAATAGGGGAGCTTAACT 	4

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Drosophila melanogaster	GSM286607-9796	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	2
---------------------TTAGAATAGGGGAGCTTAACTT 	14

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Drosophila melanogaster	GSM286604-9792	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	34
---------------------TTAGAATAGGGGAGCTTAA 	8
---------------------TTAGAATAGGGGAGCTTAACTT 	90
---------------------TTAGAATAGGGGAGCTTAAC 	1
----------------------TAGAATAGGGGAGCTTAACTTA 	11
----------------------TAGAATAGGGGAGCTTAACT 	11
----------------------TAGAATAGGGGAGCTTAACTT 	36
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAAG 	3
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCT 	3
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTA 	3
-------------------------------------------------------------TTAAAAGCCTCTGTTCTAAGA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Drosophila melanogaster	GSM385744-16261	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	3
---------------------TTAGAATAGGGGAGCTTAACTT 	10
----------------------TAGAATAGGGGAGCTTAACTTA 	1
-------------------------------------------------------------TTAAAAGCCTCTGTTCTAAG 	1

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Drosophila melanogaster	GSM385748-16264	TTAGAATAGGGGAGCTTAACTT	GTTAAAAGCCTCTGTTCTAAGA	up	3	0

Secondary structure

AACATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGTTTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAAC
---------------------TTAGAATAGGGGAGCTTAACT 	3
---------------------TTAGAATAGGGGAGCTTAACTT 	17
---------------------TTAGAATAGGGGAGCTTAAC 	1
----------------------TAGAATAGGGGAGCTTAACTTA 	1
----------------------TAGAATAGGGGAGCTTAACT 	1
-----------------------------------------------------------AGTTAAAAGCCTCTGTTCTAAG 	1
------------------------------------------------------------GTTAAAAGCCTCTGTTCTAAGA 	3
------------------------------------------------------------GTTAAAAGCCTCTGTTCTAA 	1
-------------------------------------------------------------TTAAAAGCCTCTGTTCTAAG 	1

HuntMi prediction: true miRNA