miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTAGAGTTTTCTGGATACTTA

selected species: Arabidopsis thaliana



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAATT up 0 1


Secondary structure

TTCCTTTCTGTTTTTTTCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGAAACAAACTCATATTT
---------------------TTAGAGTTTTCTGGATACTTA 	7
-------------------------------------------------------------------------------------AGTATCCAGAAAACTCTAAAT 	1


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAT up 0 1


Secondary structure

AAATATGAGTTTGTTTCAAATTTAGAGTTTTCTGGATACTTAAAAGTTAATATCGAAGAAGCCCTCTCTTTGTTAGTAACTAATAAGTATCCAGAAAACTCTAATTTGAAAAAAACAGAAAGG
---------------------TTAGAGTTTTCTGGATACTTA 	7


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAATT up 0 1


Secondary structure

TTCCTTTCTGTTTTTTTCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGAAACAAACTCATATTT
---------------------TTAGAGTTTTCTGGATACTTA 	6


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366870 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAT up 0 1


Secondary structure

AAATATGAGTTTGTTTCAAATTTAGAGTTTTCTGGATACTTAAAAGTTAATATCGAAGAAGCCCTCTCTTTGTTAGTAACTAATAAGTATCCAGAAAACTCTAATTTGAAAAAAACAGAAAGG
---------------------TTAGAGTTTTCTGGATACTTA 	6


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366869 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAATT up 0 1


Secondary structure

TTCCTTTCTGTTTTTTTCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGAAACAAACTCATATTT
---------------------TTAGAGTTTTCTGGATACTTA 	6


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366869 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAT up 0 1


Secondary structure

AAATATGAGTTTGTTTCAAATTTAGAGTTTTCTGGATACTTAAAAGTTAATATCGAAGAAGCCCTCTCTTTGTTAGTAACTAATAAGTATCCAGAAAACTCTAATTTGAAAAAAACAGAAAGG
---------------------TTAGAGTTTTCTGGATACTTA 	6


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM366866 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAATT up 0 1


Secondary structure

TTCCTTTCTGTTTTTTTCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGAAACAAACTCATATTT
---------------------TTAGAGTTTTCTGGATACTTA 	19


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM366866 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAT up 0 1


Secondary structure

AAATATGAGTTTGTTTCAAATTTAGAGTTTTCTGGATACTTAAAAGTTAATATCGAAGAAGCCCTCTCTTTGTTAGTAACTAATAAGTATCCAGAAAACTCTAATTTGAAAAAAACAGAAAGG
---------------------TTAGAGTTTTCTGGATACTTA 	19


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Arabidopsis thaliana GSM518432-13544 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAATT up 0 1


Secondary structure

TTCCTTTCTGTTTTTTTCAAATTAGAGTTTTCTGGATACTTATTAGTTACTAACAAAGAGAGGGCTTCTTCGATATTAACTTTTAAGTATCCAGAAAACTCTAAATTTGAAACAAACTCATATTT
---------------------TTAGAGTTTTCTGGATACTTA 	10
---------------------------TTTTCTGGATACTTATTAGTT 	2


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Arabidopsis thaliana GSM518432-13544 TTAGAGTTTTCTGGATACTTA AGTATCCAGAAAACTCTAAT up 0 1


Secondary structure

AAATATGAGTTTGTTTCAAATTTAGAGTTTTCTGGATACTTAAAAGTTAATATCGAAGAAGCCCTCTCTTTGTTAGTAACTAATAAGTATCCAGAAAACTCTAATTTGAAAAAAACAGAAAGG
---------------------TTAGAGTTTTCTGGATACTTA 	10


Overlaps with miRBase pre-miRNAs: ath-MIR781b
HuntMi prediction: true miRNA