miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTAGATGACCATCAGCAAACA

selected species: Oryza sativa

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM693280	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAAC 	1
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	70
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	1
-----------------------------------------------------------------------------------------------------------------TGACCATCAGCAAACAAGTTC 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM571078-22531	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	344
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	4
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	1
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	29
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACAA 	1
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACA 	6
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACAAG 	2

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM520638-18676	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
----TGAACCTGTTTTGTTGCTGGTC 	1
--------CCTGTTTTGTTGCTGGTCATCT 	1
----------TGTTTTGTTGCTGGTCATCTAG 	1
------------TTTTGTTGCTGGTCATCTAGCTAC 	1
------------TTTTGTTGCTGGTCATCTAGCTA 	2
------------TTTTGTTGCTGGTCATCTAGCT 	19
------------TTTTGTTGCTGGTCATCTAGC 	8
------------TTTTGTTGCTGGTCATCTAG 	1
-------------TTTGTTGCTGGTCATCTAGCT 	1
--------------------CTGGTCATCTAGCTACCCGTG 	1
---------------------TGGTCATCTAGCTACCCGTGC 	2
----------------------------------------------------------------------------------------------------ACGCGTGGTTAGATGACCATC 	1
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	6
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	1260
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAA 	7
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	7
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACA 	2
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTT 	2

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM686040-31373	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
---------------------TGGTCATCTAGCTACCCGTGC 	7
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAACAA 	2
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAACA 	11
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	4
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	1238
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	6
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACAA 	2
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	12
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCGT 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM520640-18679	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
----TGAACCTGTTTTGTTGCTGGTC 	3
------------TTTTGTTGCTGGTCATCTAGCTAC 	2
------------TTTTGTTGCTGGTCATCTAGCTA 	2
------------TTTTGTTGCTGGTCATCTAGCT 	8
------------TTTTGTTGCTGGTCATCTAGC 	4
------------TTTTGTTGCTGGTCATCTAG 	2
----------------------------------------------------------------------------------------------------ACGCGTGGTTAGATGACCATC 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	17
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	7
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	1386
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAA 	14
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	5
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACA 	3
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCGT 	3
-----------------------------------------------------------------------------------------------------------------TGACCATCAGCAAACAAGTT 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM571077-22529	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
------------TTTTGTTGCTGGTCATCTAGCT 	1
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	249
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	3
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	2
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	9
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACA 	4
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACAAG 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM686039-31370	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	81

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM520636-18672	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	1
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	158
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACAAGTT 	4
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCGT 	74
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCG 	11
---------------------------------------------------------------------------------------------------------------------CATCAGCAAACAAGTTCGT 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM520635-18669	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
------------TTTTGTTGCTGGTCATCTAG 	2
------------TTTTGTTGCTGGTCATCTAGCTAC 	4
------------TTTTGTTGCTGGTCATCTAGCTA 	2
------------TTTTGTTGCTGGTCATCTA 	1
------------TTTTGTTGCTGGTCATCTAGCT 	1
----------------------------------------------------------------------------------------------------ACGCGTGGTTAGATGACCATC 	1
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAACAA 	2
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAACA 	3
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	43
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCGT 	13
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCG 	1
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTC 	1
-------------------------------------------------------------------------------------------------------------------ACCATCAGCAAACAAGTTCGTG 	4

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM520637-18674	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
----TGAACCTGTTTTGTTGCTGGTC 	1
----------TGTTTTGTTGCTGGTCATCTAG 	1
------------TTTTGTTGCTGGTCATCTAGCTAC 	3
------------TTTTGTTGCTGGTCATCTAGCT 	35
------------TTTTGTTGCTGGTCATCTAGC 	2
------------TTTTGTTGCTGGTCATCTAG 	2
--------------TTGTTGCTGGTCATCTAGCT 	1
---------------------TGGTCATCTAGCTACCCGTGC 	1
----------------------------------------------------------------------------------------------------ACGCGTGGTTAGATGACCATCAGC 	1
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	26
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	932
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAA 	14
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	7
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACA 	2
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTT 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Oryza sativa	GSM693279	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
----TGAACCTGTTTTGTTGCTG 	1
------------TTTTGTTGCTGGTCATCTA 	2
------------TTTTGTTGCTGGTCATCTAG 	1
------------TTTTGTTGCTGGTCATCTAGCTACC 	1
---------------------TGGTCATCTAGCTACCCGTGC 	2
----------------------------------------------------------------------------------------------TTGGGCACGCGTGGTTAGATG 	1
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAAC 	1
----------------------------------------------------------------------------------------------------------GGTTAGATGACCATCAGCAAACA 	1
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	389
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACAA 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	1
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	4
--------------------------------------------------------------------------------------------------------------AGATGACCATCAGCAAACA 	5
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCGT 	2
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTT 	1
-----------------------------------------------------------------------------------------------------------------TGACCATCAGCAAACAAGTTC 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Oryza sativa	GSM520639-18678	TTAGATGACCATCAGCAAACA	TTTTGTTGCTGGTCATCTAGCT	down	1	1

Secondary structure

CCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGA
----TGAACCTGTTTTGTTGCTGGTCA 	3
------------TTTTGTTGCTGGTCATCTA 	1
------------TTTTGTTGCTGGTCATCTAGCT 	44
-------------TTTGTTGCTGGTCATCTAGCT 	2
---------------------TGGTCATCTAGCTACCCGTGC 	2
----------------------------------------------------------------------------------------------------ACGCGTGGTTAGATGACCATC 	2
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAACA 	424
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAA 	6
------------------------------------------------------------------------------------------------------------TTAGATGACCATCAGCAAAC 	5
-------------------------------------------------------------------------------------------------------------TAGATGACCATCAGCAAACA 	6
----------------------------------------------------------------------------------------------------------------ATGACCATCAGCAAACAAGTTCGT 	1

Overlaps with: MNEST042187 MNEST049093
Overlaps with miRBase pre-miRNAs: osa-MIR827a
HuntMi prediction: true miRNA