miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTAGATGATCATCAACAAACA

selected species: Vitis vinifera



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458927 TTAGATGATCATCAACAAACA TTTTGTTGCTGGTCATCTAGTC down 1 1


Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
---------------------------------------------------------------------------------------GATTAGATGATCATCAACAAAC 	1
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAACA 	2
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	74
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAA 	1
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	43
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	24357
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	443
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	15
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACAC 	1
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	33
------------------------------------------------------------------------------------------TAGATGATCATCAACAAAC 	2
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	4


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458930-2718 TTAGATGATCATCAACAAACA TTTTGTTGCTGGTCATCTAGTC down 1 1


Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
---------------------------------------------------------------------------------------GATTAGATGATCATCAACAAACA 	1
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	10
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	14
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	6234
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	351
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	9
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	7
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Vitis vinifera GSM458929-2717 TTAGATGATCATCAACAAACA TTTTGTTGCTGGTCATCTAGTC down 1 1


Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
--------------------------------TTTTGTTGCTGGTCATCTAG 	1
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	28
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	14
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	7299
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	338
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	7
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	11
------------------------------------------------------------------------------------------TAGATGATCATCAACAAAC 	1
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	2


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Vitis vinifera GSM458928-2716 TTAGATGATCATCAACAAACA TTTTGTTGCTGGTCATCTAGTC down 1 1


Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	22
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAA 	1
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	20
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	8031
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	143
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	1
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	13
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	2


HuntMi prediction: true miRNA