miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTAGATGATCATCAACAAACA

selected species: Vitis vinifera

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	TTAGATGATCATCAACAAACA	TTTTGTTGCTGGTCATCTAGTC	down	1	1

Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
---------------------------------------------------------------------------------------GATTAGATGATCATCAACAAAC 	1
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAACA 	2
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	74
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAA 	1
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	43
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	24357
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	443
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	15
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACAC 	1
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	33
------------------------------------------------------------------------------------------TAGATGATCATCAACAAAC 	2
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	4

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458930-2718	TTAGATGATCATCAACAAACA	TTTTGTTGCTGGTCATCTAGTC	down	1	1

Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
---------------------------------------------------------------------------------------GATTAGATGATCATCAACAAACA 	1
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	10
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	14
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	6234
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	351
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	9
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	7
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458929-2717	TTAGATGATCATCAACAAACA	TTTTGTTGCTGGTCATCTAGTC	down	1	1

Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
--------------------------------TTTTGTTGCTGGTCATCTAG 	1
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	28
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	14
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	7299
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	338
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	7
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	11
------------------------------------------------------------------------------------------TAGATGATCATCAACAAAC 	1
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	2

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458928-2716	TTAGATGATCATCAACAAACA	TTTTGTTGCTGGTCATCTAGTC	down	1	1

Secondary structure

GGTCTAGTATGTGTTTTGCAGCTATGAATATGTTTTGTTGCTGGTCATCTAGTCATTGTTAGTCATGTTTAACGCTCATGGCAGGATGATTAGATGATCATCAACAAACACATTCAGGATAATGCATCACACCACGGCT
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAAC 	22
----------------------------------------------------------------------------------------ATTAGATGATCATCAACAAA 	1
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACAC 	20
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAACA 	8031
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAAC 	143
-----------------------------------------------------------------------------------------TTAGATGATCATCAACAAA 	1
------------------------------------------------------------------------------------------TAGATGATCATCAACAAACA 	13
-------------------------------------------------------------------------------------------AGATGATCATCAACAAACA 	2

HuntMi prediction: true miRNA