miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTAGATTCACGCACAAACTCG

selected species: Vitis vinifera

20 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Vitis vinifera	GSM458927	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGTGATCTGTCCTTCTGAAAA
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCGT 	4
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	1243
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	67
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	8
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	7
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041679 MNEST054888
Overlaps with miRBase pre-miRNAs: vvi-MIR403c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Vitis vinifera	GSM458927	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGTGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGCGATCTGTCCTTCTGAAAC
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	1243
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	67
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	8
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	7
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041681 MNEST054890
Overlaps with miRBase pre-miRNAs: vvi-MIR403e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Vitis vinifera	GSM458927	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACG	down	2	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACGCCTCGATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	1243
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	67
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	8
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	7
----------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041678 MNEST054887
Overlaps with miRBase pre-miRNAs: vvi-MIR403b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Vitis vinifera	GSM458927	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACC	down	4	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACCCCTCAATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	1243
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	67
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	8
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	7
----------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041680 MNEST054889
Overlaps with miRBase pre-miRNAs: vvi-MIR403d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Vitis vinifera	GSM458927	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

CAAACCTCTTATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGGCGTTAGATTCACGCACAAACTCGTGAGTTCTGAAACATCTAATGATTTCCCC
-----------------------------------------------------------------------------------------------ATTCGACGGCGTTAGATTCACGCA 	1
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCGT 	4
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	1243
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	67
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	8
-----------------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	7
------------------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041677 MNEST054886
Overlaps with miRBase pre-miRNAs: vvi-MIR403a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Vitis vinifera	GSM458930-2718	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGTGATCTGTCCTTCTGAAAA
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	593
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	51
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	6
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTC 	1

Overlaps with: MNEST041679 MNEST054888
Overlaps with miRBase pre-miRNAs: vvi-MIR403c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Vitis vinifera	GSM458930-2718	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGTGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGCGATCTGTCCTTCTGAAAC
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	593
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	51
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	6
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTC 	1

Overlaps with: MNEST041681 MNEST054890
Overlaps with miRBase pre-miRNAs: vvi-MIR403e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Vitis vinifera	GSM458930-2718	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACG	down	2	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACGCCTCGATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	593
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	51
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	6
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
---------------------------------------------------------------------TAGATTCACGCACAAACTC 	1

Overlaps with: MNEST041678 MNEST054887
Overlaps with miRBase pre-miRNAs: vvi-MIR403b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Vitis vinifera	GSM458930-2718	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACC	down	4	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACCCCTCAATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
-----------------------AGTTTGTGCGCGAATCCAACCCC 	2
-----------------------AGTTTGTGCGCGAATCCAACC 	2
-------------------------TTTGTGCGCGAATCCAACCCC 	2
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	593
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	51
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	6
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
---------------------------------------------------------------------TAGATTCACGCACAAACTC 	1

Overlaps with: MNEST041680 MNEST054889
Overlaps with miRBase pre-miRNAs: vvi-MIR403d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Vitis vinifera	GSM458930-2718	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

CAAACCTCTTATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGGCGTTAGATTCACGCACAAACTCGTGAGTTCTGAAACATCTAATGATTTCCCC
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	593
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	51
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	6
-----------------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
-----------------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTC 	1

Overlaps with: MNEST041677 MNEST054886
Overlaps with miRBase pre-miRNAs: vvi-MIR403a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Vitis vinifera	GSM458929-2717	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGTGATCTGTCCTTCTGAAAA
-----------------------------------------------------------------------------------------------GTTAGATTCACGCACAAACTC 	1
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCGT 	1
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	2191
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	206
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	47
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCGT 	1
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	13
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041679 MNEST054888
Overlaps with miRBase pre-miRNAs: vvi-MIR403c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Vitis vinifera	GSM458929-2717	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGTGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGCGATCTGTCCTTCTGAAAC
-----------------------------------------------------------------------------------------------GTTAGATTCACGCACAAACTC 	1
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	2191
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	206
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	47
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	13
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCGC 	1
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041681 MNEST054890
Overlaps with miRBase pre-miRNAs: vvi-MIR403e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Vitis vinifera	GSM458929-2717	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACG	down	2	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACGCCTCGATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
------------------CCTCGAGTTTGTGCGCGAATC 	1
-------------------------------------------------------------------GTTAGATTCACGCACAAACTC 	1
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	2191
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	206
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	47
---------------------------------------------------------------------TAGATTCACGCACAAACTCGG 	3
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	13
----------------------------------------------------------------------AGATTCACGCACAAACTCG 	1
-------------------------------------------------------------------------TTCACGCACAAACTCGGGATCTG 	1

Overlaps with: MNEST041678 MNEST054887
Overlaps with miRBase pre-miRNAs: vvi-MIR403b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
14	Vitis vinifera	GSM458929-2717	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACC	down	4	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACCCCTCAATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
------------------CCTCGAGTTTGTGCGCGAATC 	1
-----------------------AGTTTGTGCGCGAATCCAACC 	2
-------------------------TTTGTGCGCGAATCCAACCCC 	7
-------------------------TTTGTGCGCGAATCCAACCC 	3
--------------------------TTGTGCGCGAATCCAACCCC 	1
-------------------------------------------------------------------GTTAGATTCACGCACAAACTC 	1
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	2191
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	206
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	47
---------------------------------------------------------------------TAGATTCACGCACAAACTCGG 	3
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	13
----------------------------------------------------------------------AGATTCACGCACAAACTCG 	1
-------------------------------------------------------------------------TTCACGCACAAACTCGGGATCTG 	1

Overlaps with: MNEST041680 MNEST054889
Overlaps with miRBase pre-miRNAs: vvi-MIR403d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
15	Vitis vinifera	GSM458929-2717	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

CAAACCTCTTATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGGCGTTAGATTCACGCACAAACTCGTGAGTTCTGAAACATCTAATGATTTCCCC
---------------------------------------------------------------------------------------------------------GTTAGATTCACGCACAAACTC 	1
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCGT 	1
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	2191
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	206
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	47
-----------------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCGT 	1
-----------------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	13
------------------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041677 MNEST054886
Overlaps with miRBase pre-miRNAs: vvi-MIR403a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
16	Vitis vinifera	GSM458928-2716	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACC	down	4	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACCCCTCAATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	652
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	19
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	4
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
----------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041680 MNEST054889
Overlaps with miRBase pre-miRNAs: vvi-MIR403d
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
17	Vitis vinifera	GSM458928-2716	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

CAAACCTCTTATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGGCGTTAGATTCACGCACAAACTCGTGAGTTCTGAAACATCTAATGATTTCCCC
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCGT 	1
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	652
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	19
----------------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	4
-----------------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
------------------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041677 MNEST054886
Overlaps with miRBase pre-miRNAs: vvi-MIR403a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
18	Vitis vinifera	GSM458928-2716	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGGGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGTGATCTGTCCTTCTGAAAA
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCGT 	1
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	652
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	19
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	4
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041679 MNEST054888
Overlaps with miRBase pre-miRNAs: vvi-MIR403c
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
19	Vitis vinifera	GSM458928-2716	TTAGATTCACGCACAAACTCG	AGTTTGTGCGTGAATCAAACC	down	3	0

Secondary structure

ATCAAGAGATGGGCACATCTCAAGTTTGTGCGTGAATCAAACCCCATCGTAGCCGTCCATATCTTCGTGTACTAATCACGGGGCGATTCGACGCCGTTAGATTCACGCACAAACTCGCGATCTGTCCTTCTGAAAC
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	652
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACTC 	19
------------------------------------------------------------------------------------------------TTAGATTCACGCACAAACT 	4
-------------------------------------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
--------------------------------------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041681 MNEST054890
Overlaps with miRBase pre-miRNAs: vvi-MIR403e
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
20	Vitis vinifera	GSM458928-2716	TTAGATTCACGCACAAACTCG	AGTTTGTGCGCGAATCCAACG	down	2	0

Secondary structure

GACAAAAGAGGATACAAACCTCGAGTTTGTGCGCGAATCCAACGCCTCGATCTTCTTTCAAAGGGGTGTTAGATTCACGCACAAACTCGGGATCTGTCTCTTCTGTAGC
--------------------------------------------------------------------TTAGATTCACGCACAAACTCG 	652
--------------------------------------------------------------------TTAGATTCACGCACAAACTC 	19
--------------------------------------------------------------------TTAGATTCACGCACAAACT 	4
---------------------------------------------------------------------TAGATTCACGCACAAACTCG 	3
----------------------------------------------------------------------AGATTCACGCACAAACTCG 	1

Overlaps with: MNEST041678 MNEST054887
Overlaps with miRBase pre-miRNAs: vvi-MIR403b
HuntMi prediction: true miRNA