miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTAGATTCACGCACAAACTTG

selected species: Glycine max



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM852280 TTAGATTCACGCACAAACTTG GGTTCGTGCGTGAATCTAATC down 1 0


Secondary structure

TGAGAGACAGAGGCAAATCGCAGGTTCGTGCGTGAATCTAATCAAAGTTTCTCATTAACTTCTGCGTTAGATTCACGCACAAACTTGTCATTTCCCTTTTCTTAAC
------------------------------------------------------------------TTAGATTCACGCACAAACTTG 	5

Overlaps with: MNEST003428
Overlaps with miRBase pre-miRNAs: gma-MIR403b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 TTAGATTCACGCACAAACTTG GGTTCGTGCGTGAATCTAACG down 1 0


Secondary structure

CACACTGCAGAGCCAAATTGCAGGTTCGTGCGTGAATCTAACGAAAGTTTCTCGTTCTCTCCATTCCACTTCTGCGTTAGATTCACGCACAAACTTGTCATTTCTCTTTTCTTGAC
----------------------------TGCGTGAATCTAACGAAAGT 	2
----------------------------------------------------------------------------TTAGATTCACGCACAAACTTG 	5


Overlaps with miRBase pre-miRNAs: gma-MIR403a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 TTAGATTCACGCACAAACTTG GGTTCGTGCGTGAATCTAATC down 1 0


Secondary structure

TGAGAGACAGAGGCAAATCGCAGGTTCGTGCGTGAATCTAATCAAAGTTTCTCATTAACTTCTGCGTTAGATTCACGCACAAACTTGTCATTTCCCTTTTCTTAAC
------------------------------------------------------------------TTAGATTCACGCACAAACTTG 	5

Overlaps with: MNEST003428
Overlaps with miRBase pre-miRNAs: gma-MIR403b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543394 TTAGATTCACGCACAAACTTG GGTTCGTGCGTGAATCTAACG down 1 0


Secondary structure

CACACTGCAGAGCCAAATTGCAGGTTCGTGCGTGAATCTAACGAAAGTTTCTCGTTCTCTCCATTCCACTTCTGCGTTAGATTCACGCACAAACTTGTCATTTCTCTTTTCTTGAC
----------------------------------------------------------------------------TTAGATTCACGCACAAACTTG 	5


Overlaps with miRBase pre-miRNAs: gma-MIR403a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543395 TTAGATTCACGCACAAACTTG GGTTCGTGCGTGAATCTAATC down 1 0


Secondary structure

TGAGAGACAGAGGCAAATCGCAGGTTCGTGCGTGAATCTAATCAAAGTTTCTCATTAACTTCTGCGTTAGATTCACGCACAAACTTGTCATTTCCCTTTTCTTAAC
------------------------------------------------------------------TTAGATTCACGCACAAACTTG 	9

Overlaps with: MNEST003428
Overlaps with miRBase pre-miRNAs: gma-MIR403b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543395 TTAGATTCACGCACAAACTTG GGTTCGTGCGTGAATCTAACG down 1 0


Secondary structure

CACACTGCAGAGCCAAATTGCAGGTTCGTGCGTGAATCTAACGAAAGTTTCTCGTTCTCTCCATTCCACTTCTGCGTTAGATTCACGCACAAACTTGTCATTTCTCTTTTCTTGAC
----------------------------------------------------------------------------TTAGATTCACGCACAAACTTG 	9


Overlaps with miRBase pre-miRNAs: gma-MIR403a
HuntMi prediction: true miRNA