miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTAGGTATTTCAGGTTAGGTG

selected species: Brachypodium distachyon



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TTAGGTATTTCAGGTTAGGTGG TACCTAGCCTAAAATATTTAAAA down 1 1


Secondary structure

GGCAGAGGCTCGTCGATTGCAAATCATGCGTGCATCTTTCTATTATTGAGCGTACCTAGCCTAAAATATTTAAAAATAATTGGAGCAACTAAAGTTGTTGTTGTTCAATTACTTTTAGGTATTTCAGGTTAGGTGGCTAACCAATGGTGGAAGTTGCACACCTGATTTGCGATTATCAACTTTAG
--------------------------------CATCTTTCTATTATTGAGCGTA 	24
---------------------------------ATCTTTCTATTATTGAGCGTA 	17
----------------------------------TCTTTCTATTATTGAGCGTA 	1
-----------------------------------------------------------------------------------------------------------------TTTAGGTATTTCAGGTTAGGTGG 	2
-----------------------------------------------------------------------------------------------------------------TTTAGGTATTTCAGGTTAGGTG 	1
-----------------------------------------------------------------------------------------------------------------TTTAGGTATTTCAGGTTAGGT 	16
------------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGTGGCT 	1
------------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGTGGC 	1
------------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGTGG 	4685
------------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGTG 	2265
------------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGT 	2
------------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGG 	1
-------------------------------------------------------------------------------------------------------------------TAGGTATTTCAGGTTAGGTGG 	188
-------------------------------------------------------------------------------------------------------------------TAGGTATTTCAGGTTAGGTG 	2
--------------------------------------------------------------------------------------------------------------------AGGTATTTCAGGTTAGGTGG 	4
--------------------------------------------------------------------------------------------------------------------AGGTATTTCAGGTTAGGTG 	2
---------------------------------------------------------------------------------------------------------------------GGTATTTCAGGTTAGGTGG 	2
---------------------------------------------------------------------------------------------------------------------------------------GCTAACCAATGGTGGAAGTTGCA 	304
----------------------------------------------------------------------------------------------------------------------------------------CTAACCAATGGTGGAAGTTGCA 	120
----------------------------------------------------------------------------------------------------------------------------------------CTAACCAATGGTGGAAGTTGC 	2
-----------------------------------------------------------------------------------------------------------------------------------------TAACCAATGGTGGAAGTTGCA 	3


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Brachypodium distachyon GSM506621-23192 TTAGGTATTTCAGGTTAGGTG CCTAGCCTAAAATATTTAAAA down 1 0


Secondary structure

CAGAGGCTCGTCGATTGCAAATCATGCGTGCATCTTTCTATTATTGAGCGTACCTAGCCTAAAATATTTAAAAATAATTGGAGCAACTAAAGTTGTTGTTGTTCAATTACTTTTAGGTATTTCAGGTTAGGTGGCTAACCAATGGTGGAAGTTGCACACCTGATTTGCGATTATCAACTTTA
---------------------------------------------------------------------------------------------------------------TTTAGGTATTTCAGGTTAGGTG 	1
---------------------------------------------------------------------------------------------------------------TTTAGGTATTTCAGGTTAGGT 	1
----------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGG 	1
----------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGTG 	68
----------------------------------------------------------------------------------------------------------------TTAGGTATTTCAGGTTAGGTGG 	32
-----------------------------------------------------------------------------------------------------------------TAGGTATTTCAGGTTAGGTGG 	4
-----------------------------------------------------------------------------------------------------------------TAGGTATTTCAGGTTAGGTG 	1
-------------------------------------------------------------------------------------------------------------------------------------GCTAACCAATGGTGGAAGTTGCA 	1

Overlaps with: MNEST041832
Overlaps with miRBase pre-miRNAs: bdi-MIR5163
HuntMi prediction: true miRNA