miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTATAATACAACCTGATAAGTG

selected species: Homo sapiens



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 TTATAATACAACCTGATAAGTG CTTATCAGATTGTATTGTAATT up 1 0


Secondary structure

GAAGAAATTTTACATCGGCCATTATAATACAACCTGATAAGTGTTATAGCACTTATCAGATTGTATTGTAATTGTCTGTGTATATGCCTGT
---------------------TTATAATACAACCTGATAAGTG 	290
---------------------TTATAATACAACCTGATAAGT 	120
---------------------TTATAATACAACCTGATAAG 	5
---------------------TTATAATACAACCTGATAAGTGT 	5
---------------------TTATAATACAACCTGATAAGTGTT 	1
-----------------------ATAATACAACCTGATAAGTG 	2
-----------------------ATAATACAACCTGATAAGT 	2
--------------------------------------------------ACTTATCAGATTGTATTGTAA 	1
--------------------------------------------------ACTTATCAGATTGTATTGTAAT 	1
---------------------------------------------------CTTATCAGATTGTATTGTAATT 	83
---------------------------------------------------CTTATCAGATTGTATTGTAAT 	20
---------------------------------------------------CTTATCAGATTGTATTGTAA 	2
---------------------------------------------------CTTATCAGATTGTATTGTA 	1
----------------------------------------------------TTATCAGATTGTATTGTAATT 	1
-----------------------------------------------------TATCAGATTGTATTGTAATT 	5


Overlaps with: MNEST028613
Overlaps with miRBase pre-miRNAs: ptr-mir-374a hsa-mir-374a ggo-mir-374a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494810_Normal_2 TTATAATACAACCTGATAAGTG CTTATCAGATTGTATTGTAATT up 1 0


Secondary structure

GAAGAAATTTTACATCGGCCATTATAATACAACCTGATAAGTGTTATAGCACTTATCAGATTGTATTGTAATTGTCTGTGTATATGCCTGT
---------------------TTATAATACAACCTGATAAGTGT 	16
---------------------TTATAATACAACCTGATAAGTG 	270
---------------------TTATAATACAACCTGATAAGT 	138
---------------------TTATAATACAACCTGATAAG 	12
---------------------TTATAATACAACCTGATAA 	5
-----------------------ATAATACAACCTGATAAGTG 	2
--------------------------------------------------ACTTATCAGATTGTATTGTAATT 	1
---------------------------------------------------CTTATCAGATTGTATTGTAATT 	169
---------------------------------------------------CTTATCAGATTGTATTGTAAT 	40
---------------------------------------------------CTTATCAGATTGTATTGTAA 	4
----------------------------------------------------TTATCAGATTGTATTGTAATT 	6


Overlaps with: MNEST028613
Overlaps with miRBase pre-miRNAs: ptr-mir-374a hsa-mir-374a ggo-mir-374a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM531974 TTATAATACAACCTGATAAGTG CTTATCAGATTGTATTGTAATT up 1 0


Secondary structure

GAAGAAATTTTACATCGGCCATTATAATACAACCTGATAAGTGTTATAGCACTTATCAGATTGTATTGTAATTGTCTGTGTATATGCCTGT
---------------------TTATAATACAACCTGATAAGTGT 	24
---------------------TTATAATACAACCTGATAAGTG 	469
---------------------TTATAATACAACCTGATAAGT 	186
---------------------TTATAATACAACCTGATAAG 	21
---------------------TTATAATACAACCTGATAA 	78
----------------------TATAATACAACCTGATAAGTG 	2
----------------------TATAATACAACCTGATAAGT 	2
---------------------------------------------------CTTATCAGATTGTATTGTAATT 	74
---------------------------------------------------CTTATCAGATTGTATTGTAAT 	31
---------------------------------------------------CTTATCAGATTGTATTGTAA 	7
----------------------------------------------------TTATCAGATTGTATTGTAATT 	1
----------------------------------------------------TTATCAGATTGTATTGTAAT 	1
-----------------------------------------------------TATCAGATTGTATTGTAAT 	1
-----------------------------------------------------TATCAGATTGTATTGTAATTGT 	1


Overlaps with: MNEST028613
Overlaps with miRBase pre-miRNAs: ptr-mir-374a hsa-mir-374a ggo-mir-374a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM565978-9532 TTATAATACAACCTGATAAGTG CTTATCAGATTGTATTGTAATT up 1 0


Secondary structure

GAAGAAATTTTACATCGGCCATTATAATACAACCTGATAAGTGTTATAGCACTTATCAGATTGTATTGTAATTGTCTGTGTATATGCCTGT
GAAGAAATTTTACATCGGCCA 	1
-AAGAAATTTTACATCGGCCA 	2
--AGAAATTTTACATCGGCCA 	1
---------------------TTATAATACAACCTGATAAGTG 	249
---------------------TTATAATACAACCTGATAAGT 	75
---------------------TTATAATACAACCTGATAAGTGT 	5
---------------------TTATAATACAACCTGATAAGTGTT 	1
---------------------TTATAATACAACCTGATAAG 	1
---------------------TTATAATACAACCTGATAA 	1
----------------------TATAATACAACCTGATAAGTG 	1
-----------------------ATAATACAACCTGATAAGT 	1
------------------------TAATACAACCTGATAAGTG 	1
--------------------------------------------------ACTTATCAGATTGTATTGTAAT 	1
---------------------------------------------------CTTATCAGATTGTATTGTAATT 	55
---------------------------------------------------CTTATCAGATTGTATTGTAAT 	22
---------------------------------------------------CTTATCAGATTGTATTGTAA 	3
---------------------------------------------------CTTATCAGATTGTATTGTA 	2
----------------------------------------------------TTATCAGATTGTATTGTAATT 	1
-----------------------------------------------------TATCAGATTGTATTGTAATT 	1


Overlaps with: MNEST028613
Overlaps with miRBase pre-miRNAs: ptr-mir-374a hsa-mir-374a ggo-mir-374a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM531982 TTATAATACAACCTGATAAGTG CTTATCAGATTGTATTGTAATT up 1 0


Secondary structure

GAAGAAATTTTACATCGGCCATTATAATACAACCTGATAAGTGTTATAGCACTTATCAGATTGTATTGTAATTGTCTGTGTATATGCCTGT
-AAGAAATTTTACATCGGCCA 	1
---------------------TTATAATACAACCTGATAAGTGT 	21
---------------------TTATAATACAACCTGATAAGTG 	644
---------------------TTATAATACAACCTGATAAGT 	141
---------------------TTATAATACAACCTGATAAG 	23
---------------------TTATAATACAACCTGATAA 	74
----------------------TATAATACAACCTGATAAGTG 	4
----------------------TATAATACAACCTGATAAGT 	5
-----------------------ATAATACAACCTGATAAGTG 	2
-----------------------ATAATACAACCTGATAAGT 	1
--------------------------------------------------ACTTATCAGATTGTATTGTAAT 	2
---------------------------------------------------CTTATCAGATTGTATTGTAATT 	90
---------------------------------------------------CTTATCAGATTGTATTGTAAT 	29
---------------------------------------------------CTTATCAGATTGTATTGTAA 	4
----------------------------------------------------TTATCAGATTGTATTGTAAT 	1
-----------------------------------------------------TATCAGATTGTATTGTAATT 	1


Overlaps with: MNEST028613
Overlaps with miRBase pre-miRNAs: ptr-mir-374a hsa-mir-374a ggo-mir-374a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM531978 TTATAATACAACCTGATAAGTG CTTATCAGATTGTATTGTAATT up 1 0


Secondary structure

GAAGAAATTTTACATCGGCCATTATAATACAACCTGATAAGTGTTATAGCACTTATCAGATTGTATTGTAATTGTCTGTGTATATGCCTGT
---------------------TTATAATACAACCTGATAAGTGT 	14
---------------------TTATAATACAACCTGATAAGTG 	276
---------------------TTATAATACAACCTGATAAGT 	84
---------------------TTATAATACAACCTGATAAG 	12
---------------------TTATAATACAACCTGATAA 	29
----------------------TATAATACAACCTGATAAGT 	2
---------------------------------------------------CTTATCAGATTGTATTGTAATT 	24
---------------------------------------------------CTTATCAGATTGTATTGTAAT 	14
---------------------------------------------------CTTATCAGATTGTATTGTAA 	3
----------------------------------------------------TTATCAGATTGTATTGTAATT 	1


Overlaps with: MNEST028613
Overlaps with miRBase pre-miRNAs: ptr-mir-374a hsa-mir-374a ggo-mir-374a
HuntMi prediction: true miRNA