miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTATAGATAATACAAGCATAT

selected species: Acyrthosiphon pisum



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Acyrthosiphon pisum GSM502519_unique_quant TTATAGATAATACAAGCATATA TATGCTTGTACATATCTATATCT up 2 1


Secondary structure

TATGATGTAAAAGATGTAAATAATGTTGAACTTATAGATAATACAAGCATATAGTTTTTTTTATTTTTTTTTCAAACGTATATGCTTGTACATATCTATATCTTCAATATTTTTTATTAATATTTTAACTG
-------------------------------TTATAGATAATACAAGCATATA 	7
-------------------------------TTATAGATAATACAAGCATAT 	7


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Acyrthosiphon pisum GSM502519_unique_quant TTATAGATAATACAAGCATAT ATGCTTGTACATATCTATATCT up 2 1


Secondary structure

TATGATGTAAAAGATGTAAATAATGTTGAACTTATAGATAATACAAGCATATAGTTTTTTTTATTTTTTTTTCAAACGTATATGCTTGTACATATCTATATCTTCAATATTTTTTATTAATATTTTAACTG
-------------------------------TTATAGATAATACAAGCATATA 	7
-------------------------------TTATAGATAATACAAGCATAT 	7


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Acyrthosiphon pisum GSM502519_unique_quant TTATAGATAATACAAGCATATA TATGCTTGTACATATCTATATCT up 2 1


Secondary structure

TATGATGTAAAAGATGTAAATAATGTTGAACTTATAGATAATACAAGCATATAGTATTTTTTTTATATTTTTTTCAAACGTATATGCTTGTACATATCTATATCTTCAATATTTTTTATTAATATTTTAACTG
-------------------------------TTATAGATAATACAAGCATATA 	7
-------------------------------TTATAGATAATACAAGCATAT 	7


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Acyrthosiphon pisum GSM502519_unique_quant TTATAGATAATACAAGCATAT ATGCTTGTACATATCTATATCT up 2 1


Secondary structure

TATGATGTAAAAGATGTAAATAATGTTGAACTTATAGATAATACAAGCATATAGTATTTTTTTTATATTTTTTTCAAACGTATATGCTTGTACATATCTATATCTTCAATATTTTTTATTAATATTTTAACTG
-------------------------------TTATAGATAATACAAGCATATA 	7
-------------------------------TTATAGATAATACAAGCATAT 	7


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Acyrthosiphon pisum GSM502519_unique_quant TTATAGATAATACAAGCATATA TATGCTTGTACATATCTATATCT up 2 1


Secondary structure

TATGATGTAAAAGATGTAAATAATGTGGAACTTATAGATAATACAAGCATATAGTATTTTTTTTATTTTTTTTCAAACGTATATGCTTGTACATATCTATATCTTCAATATTTTTTATTAATATTTTAACTG
-------------------------------TTATAGATAATACAAGCATATA 	7
-------------------------------TTATAGATAATACAAGCATAT 	7


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Acyrthosiphon pisum GSM502519_unique_quant TTATAGATAATACAAGCATAT ATGCTTGTACATATCTATATCT up 2 1


Secondary structure

TATGATGTAAAAGATGTAAATAATGTGGAACTTATAGATAATACAAGCATATAGTATTTTTTTTATTTTTTTTCAAACGTATATGCTTGTACATATCTATATCTTCAATATTTTTTATTAATATTTTAACTG
-------------------------------TTATAGATAATACAAGCATATA 	7
-------------------------------TTATAGATAATACAAGCATAT 	7


HuntMi prediction: true miRNA