miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTATCAGAATCTCCAGGGGTAC

selected species: Homo sapiens



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM565979-9647 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
---------------------TTATCAGAATCTCCAGGGGTAC 	26
---------------------TTATCAGAATCTCCAGGGGTA 	9
---------------------TTATCAGAATCTCCAGGGGTACT 	4
---------------------TTATCAGAATCTCCAGGGG 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494810_Normal_2 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
---------------------TTATCAGAATCTCCAGGGGTACT 	36
---------------------TTATCAGAATCTCCAGGGGTAC 	162
---------------------TTATCAGAATCTCCAGGGGTA 	24
---------------------TTATCAGAATCTCCAGGGGT 	3
----------------------TATCAGAATCTCCAGGGGTAC 	2
-----------------------------------------------------------GTCCCCCAGGTGTGATTCTGATT 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	19
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	33
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	40
------------------------------------------------------------TCCCCCAGGTGTGATTCTGAT 	25
------------------------------------------------------------TCCCCCAGGTGTGATTCTGA 	9
------------------------------------------------------------TCCCCCAGGTGTGATTCTG 	1
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTGC 	3
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	1
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATT 	1
--------------------------------------------------------------CCCCAGGTGTGATTCTGATTTG 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM565978-9532 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
---------------------TTATCAGAATCTCCAGGGGTAC 	34
---------------------TTATCAGAATCTCCAGGGGTA 	11
---------------------TTATCAGAATCTCCAGGGG 	2
---------------------TTATCAGAATCTCCAGGGGTACT 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	2
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	1
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTGC 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM337570 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
---------------------TTATCAGAATCTCCAGGGGTACT 	1
---------------------TTATCAGAATCTCCAGGGGTAC 	21
---------------------TTATCAGAATCTCCAGGGGT 	1
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTGC 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM531982 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
--------------------CTTATCAGAATCTCCAGGGGTAC 	5
--------------------CTTATCAGAATCTCCAGGGGT 	2
--------------------CTTATCAGAATCTCCAGGGG 	1
--------------------CTTATCAGAATCTCCAGGG 	1
--------------------CTTATCAGAATCTCCAGGGGTA 	1
---------------------TTATCAGAATCTCCAGGGGTACT 	27
---------------------TTATCAGAATCTCCAGGGGTAC 	507
---------------------TTATCAGAATCTCCAGGGGTA 	121
---------------------TTATCAGAATCTCCAGGGGT 	61
---------------------TTATCAGAATCTCCAGGGG 	32
---------------------TTATCAGAATCTCCAGGGGTACTT 	1
----------------------TATCAGAATCTCCAGGGGTAC 	4
----------------------TATCAGAATCTCCAGGGGT 	1
----------------------TATCAGAATCTCCAGGGGTA 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	6
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	6
------------------------------------------------------------TCCCCCAGGTGTGATTCTGA 	2
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTGC 	8
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	2
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	1
--------------------------------------------------------------CCCCAGGTGTGATTCTGATT 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Homo sapiens GSM494811_K562 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
---------------------TTATCAGAATCTCCAGGGGTAC 	34
---------------------TTATCAGAATCTCCAGGGGTACT 	2
---------------------TTATCAGAATCTCCAGGGGTA 	2
---------------------TTATCAGAATCTCCAGGGGT 	2
---------------------TTATCAGAATCTCCAGGGGTACTT 	1
----------------------------------------------------------AGTCCCCCAGGTGTGATTCTGATTT 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	3
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTGC 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Homo sapiens GSM494812_HL60 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGC up 5 2


Secondary structure

TTTTTCCTGGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCTCCTCCTG
--------------------CTTATCAGAATCTCCAGGGGTAC 	1
---------------------TTATCAGAATCTCCAGGGGTACT 	27
---------------------TTATCAGAATCTCCAGGGGTAC 	366
---------------------TTATCAGAATCTCCAGGGGTA 	20
---------------------TTATCAGAATCTCCAGGGGT 	6
---------------------TTATCAGAATCTCCAGGGG 	3
---------------------TTATCAGAATCTCCAGGGGTACTTT 	1
---------------------TTATCAGAATCTCCAGGGGTACTT 	1
----------------------TATCAGAATCTCCAGGGGTAC 	1
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	12
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGC 	2
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	3
------------------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	2
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTGC 	8
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	2
-------------------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	1

Overlaps with: MNEST027859 MNEST027860 MNEST028596 MNEST028597 MNEST030963 MNEST030964
Overlaps with miRBase pre-miRNAs: ptr-mir-361 mml-mir-361 hsa-mir-361 ppy-mir-361
HuntMi prediction: true miRNA