miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTATCAGAATCTCCAGGGGTAC

selected species: Mus musculus



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGT up 5 2


Secondary structure

GACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCT
----------CTTATCAGAATCTCCAGGGGTAC 	2
-----------TTATCAGAATCTCCAGGGG 	14
-----------TTATCAGAATCTCCAGGGGTACT 	15
-----------TTATCAGAATCTCCAGGGGT 	67
-----------TTATCAGAATCTCCAGGGGTAC 	525
-----------TTATCAGAATCTCCAGGGGTA 	79
------------TATCAGAATCTCCAGGGGTAC 	5
------------TATCAGAATCTCCAGGGGTA 	1
-------------ATCAGAATCTCCAGGGGTAC 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	8
------------------------------------------------TCCCCCAGGTGTGATTCTGAT 	2
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGT 	20
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	17
------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	24
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGT 	37
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	7
-------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	3
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGTT 	1
--------------------------------------------------CCCCAGGTGTGATTCTGATTTGT 	1
---------------------------------------------------CCCAGGTGTGATTCTGATTTGT 	1


Overlaps with: MNEST032031
Overlaps with miRBase pre-miRNAs: mmu-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGT up 5 2


Secondary structure

GACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCT
----------CTTATCAGAATCTCCAGGGGTAC 	1
-----------TTATCAGAATCTCCAGGGG 	3
-----------TTATCAGAATCTCCAGGGGTA 	23
-----------TTATCAGAATCTCCAGGGGTAC 	140
-----------TTATCAGAATCTCCAGGGGTACT 	4
-----------TTATCAGAATCTCCAGGGGT 	28
------------TATCAGAATCTCCAGGGGTAC 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGTT 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGT 	10
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	2
------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	2
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGTT 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	2
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGT 	20


Overlaps with: MNEST032031
Overlaps with miRBase pre-miRNAs: mmu-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGT up 5 2


Secondary structure

GACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCT
----------CTTATCAGAATCTCCAGGGGTA 	1
-----------TTATCAGAATCTCCAGGGG 	5
-----------TTATCAGAATCTCCAGGGGTAC 	498
-----------TTATCAGAATCTCCAGGGGTA 	56
-----------TTATCAGAATCTCCAGGGGTACT 	8
-----------TTATCAGAATCTCCAGGGGT 	51
------------TATCAGAATCTCCAGGGGTACT 	2
------------TATCAGAATCTCCAGGGGTAC 	7
------------TATCAGAATCTCCAGGGGT 	1
-----------------------------------------------GTCCCCCAGGTGTGATTCTGATTT 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGTT 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	7
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGT 	20
------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	11
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	4
-------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	10
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGT 	28
--------------------------------------------------CCCCAGGTGTGATTCTGATTTGT 	2
--------------------------------------------------CCCCAGGTGTGATTCTGATTT 	1
--------------------------------------------------CCCCAGGTGTGATTCTGATT 	1


Overlaps with: MNEST032031
Overlaps with miRBase pre-miRNAs: mmu-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539869 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGT up 5 2


Secondary structure

GACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCT
-----------TTATCAGAATCTCCAGGGGTACT 	5
-----------TTATCAGAATCTCCAGGGGTAC 	115
-----------TTATCAGAATCTCCAGGGGTA 	47
-----------TTATCAGAATCTCCAGGGG 	2
-----------TTATCAGAATCTCCAGGGGTACTT 	1
-----------TTATCAGAATCTCCAGGGGT 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGT 	16
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	3
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGTT 	4
------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	7
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGT 	29
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGTT 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	2


Overlaps with: MNEST032031
Overlaps with miRBase pre-miRNAs: mmu-mir-361
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539878 TTATCAGAATCTCCAGGGGTAC CCCCCAGGTGTGATTCTGATTTGT up 5 2


Secondary structure

GACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTATTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCT
-----------TTATCAGAATCTCCAGGGGTAC 	30
-----------TTATCAGAATCTCCAGGGGTA 	27
-----------TTATCAGAATCTCCAGGGGT 	3
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTGT 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATTTG 	1
------------------------------------------------TCCCCCAGGTGTGATTCTGATTT 	3
------------------------------------------------TCCCCCAGGTGTGATTCTGATT 	2
------------------------------------------------TCCCCCAGGTGTGATTCTGAT 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTGT 	6
-------------------------------------------------CCCCCAGGTGTGATTCTGATTTG 	1
-------------------------------------------------CCCCCAGGTGTGATTCTGATTT 	1
--------------------------------------------------CCCCAGGTGTGATTCTGATTTGTT 	1


Overlaps with: MNEST032031
Overlaps with miRBase pre-miRNAs: mmu-mir-361
HuntMi prediction: true miRNA