miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTATGATGTAGATTCTTCAT

selected species: Physcomitrella patens

13 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM115097	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------TCTGGATTATGATGTAGATTC 	1
-------------------------------TTATGATGTAGATTCTTCATC 	10
-------------------------------TTATGATGTAGATTCTTCAT 	8
--------------------------------TATGATGTAGATTCTTCATC 	1
--------------------------------TATGATGTAGATTCTTCAT 	1
---------------------------------------------------------------------------TGGAGGATCTGCATCGTAAAC 	6

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM313212	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------------TTATGATGTAGATTCTTCAT 	81
-------------------------------TTATGATGTAGATTCTTCATC 	162
--------------------------------TATGATGTAGATTCTTCATCT 	1
--------------------------------TATGATGTAGATTCTTCAT 	45
--------------------------------TATGATGTAGATTCTTCATC 	63
---------------------------------ATGATGTAGATTCTTCATC 	5
----------------------------------TGATGTAGATTCTTCATCT 	1

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM313212	TTATGATGTAGATTCTTCATC	AGAAGGGTCTACATCATAAAC	up	1	0

Secondary structure

ACAAAATCGTGTTGATCTAGATTATGATGTAGATTCTTCATCTGGAATTGAATTTCGATTTAAGAAGAAGGGTCTACATCATAAACTGGATGATTACGATTGTT
---------------TCTAGATTATGATGTAGATT 	1
-----------------TAGATTATGATGTAGATTCTT 	2
-----------------TAGATTATGATGTAGATTCT 	1
---------------------TTATGATGTAGATTCTTCATCTG 	1
---------------------TTATGATGTAGATTCTTCAT 	81
---------------------TTATGATGTAGATTCTTCATC 	162
---------------------TTATGATGTAGATTCTTCATCTGG 	1
----------------------TATGATGTAGATTCTTCATCT 	1
----------------------TATGATGTAGATTCTTCAT 	45
----------------------TATGATGTAGATTCTTCATC 	63
-----------------------ATGATGTAGATTCTTCATC 	5
-----------------------ATGATGTAGATTCTTCATCTGGAA 	1
------------------------TGATGTAGATTCTTCATCTGG 	1
------------------------TGATGTAGATTCTTCATCT 	1
------------------------TGATGTAGATTCTTCATCTGGAAT 	1
--------------------------------------------------------------AGAAGAAGGGTCTACATCATAAAC 	1
-----------------------------------------------------------------AGAAGGGTCTACATCATAAACT 	2
-----------------------------------------------------------------AGAAGGGTCTACATCATAAAC 	11
-----------------------------------------------------------------AGAAGGGTCTACATCATAAA 	4

Overlaps with: MNEST039559 MNEST039560
Overlaps with miRBase pre-miRNAs: ppt-MIR902h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM115095	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------------TTATGATGTAGATTCTTCATCT 	1
-------------------------------TTATGATGTAGATTCTTCATC 	11
-------------------------------TTATGATGTAGATTCTTCAT 	3
--------------------------------TATGATGTAGATTCTTCATCT 	1
--------------------------------TATGATGTAGATTCTTCATC 	1
--------------------------------TATGATGTAGATTCTTCAT 	1

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Physcomitrella patens	GSM313213	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
------------------------------ATTATGATGTAGATTCTTCAT 	1
-------------------------------TTATGATGTAGATTCTTCAT 	104
-------------------------------TTATGATGTAGATTCTTCATCT 	1
-------------------------------TTATGATGTAGATTCTTCATC 	179
--------------------------------TATGATGTAGATTCTTCATCT 	2
--------------------------------TATGATGTAGATTCTTCAT 	38
--------------------------------TATGATGTAGATTCTTCATC 	55
---------------------------------ATGATGTAGATTCTTCATC 	8

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Physcomitrella patens	GSM313213	TTATGATGTAGATTCTTCATC	AGAAGGGTCTACATCATAAAC	up	1	0

Secondary structure

ACAAAATCGTGTTGATCTAGATTATGATGTAGATTCTTCATCTGGAATTGAATTTCGATTTAAGAAGAAGGGTCTACATCATAAACTGGATGATTACGATTGTT
------------TGATCTAGATTATGATGTAGA 	2
----------------CTAGATTATGATGTAGATTCT 	1
-----------------TAGATTATGATGTAGATTC 	1
-----------------TAGATTATGATGTAGATTCTT 	3
--------------------ATTATGATGTAGATTCTTCAT 	1
---------------------TTATGATGTAGATTCTTCAT 	104
---------------------TTATGATGTAGATTCTTCATCT 	1
---------------------TTATGATGTAGATTCTTCATC 	179
----------------------TATGATGTAGATTCTTCATCT 	2
----------------------TATGATGTAGATTCTTCAT 	38
----------------------TATGATGTAGATTCTTCATCTG 	1
----------------------TATGATGTAGATTCTTCATC 	55
-----------------------ATGATGTAGATTCTTCATC 	8
-----------------------ATGATGTAGATTCTTCATCTGGAA 	1
------------------------TGATGTAGATTCTTCATCTGG 	2
------------------------TGATGTAGATTCTTCATCTGGAAT 	2
----------------------------------------------------------------AAGAAGGGTCTACATCATAAA 	1
-----------------------------------------------------------------AGAAGGGTCTACATCATAAAC 	13
-----------------------------------------------------------------AGAAGGGTCTACATCATAAA 	1

Overlaps with: MNEST039559 MNEST039560
Overlaps with miRBase pre-miRNAs: ppt-MIR902h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Physcomitrella patens	GSM313215	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------------TTATGATGTAGATTCTTCAT 	12
-------------------------------TTATGATGTAGATTCTTCATCT 	1
-------------------------------TTATGATGTAGATTCTTCA 	1
-------------------------------TTATGATGTAGATTCTTCATC 	110
--------------------------------TATGATGTAGATTCTTCAT 	1
--------------------------------TATGATGTAGATTCTTCATC 	10

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Physcomitrella patens	GSM313215	TTATGATGTAGATTCTTCATC	AGAAGGGTCTACATCATAAAC	up	1	0

Secondary structure

ACAAAATCGTGTTGATCTAGATTATGATGTAGATTCTTCATCTGGAATTGAATTTCGATTTAAGAAGAAGGGTCTACATCATAAACTGGATGATTACGATTGTT
---------------------TTATGATGTAGATTCTTCAT 	12
---------------------TTATGATGTAGATTCTTCATCT 	1
---------------------TTATGATGTAGATTCTTCA 	1
---------------------TTATGATGTAGATTCTTCATC 	110
----------------------TATGATGTAGATTCTTCAT 	1
----------------------TATGATGTAGATTCTTCATC 	10
------------------------TGATGTAGATTCTTCATCTGG 	2
-----------------------------------------------------------------AGAAGGGTCTACATCATAAACT 	2
-----------------------------------------------------------------AGAAGGGTCTACATCATAAA 	5
-----------------------------------------------------------------AGAAGGGTCTACATCATAAAC 	45

Overlaps with: MNEST039559 MNEST039560
Overlaps with miRBase pre-miRNAs: ppt-MIR902h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Physcomitrella patens	GSM115096	TTATGATGTAGATTCTTCAT	GGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------------TTATGATGTAGATTCTTCATC 	41
-------------------------------TTATGATGTAGATTCTTCAT 	77
--------------------------------TATGATGTAGATTCTTCATCT 	2
--------------------------------TATGATGTAGATTCTTCATC 	10
--------------------------------TATGATGTAGATTCTTCAT 	18
---------------------------------ATGATGTAGATTCTTCATC 	1

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Physcomitrella patens	GSM313216	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------------TTATGATGTAGATTCTTCAT 	101
-------------------------------TTATGATGTAGATTCTTCATCT 	1
-------------------------------TTATGATGTAGATTCTTCATC 	201
-------------------------------TTATGATGTAGATTCTTCA 	4
--------------------------------TATGATGTAGATTCTTCAT 	30
--------------------------------TATGATGTAGATTCTTCATC 	43
---------------------------------ATGATGTAGATTCTTCATC 	8

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Physcomitrella patens	GSM313214	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
-------------------------------TTATGATGTAGATTCTTCATCT 	1
-------------------------------TTATGATGTAGATTCTTCATC 	163
-------------------------------TTATGATGTAGATTCTTCAT 	36
--------------------------------TATGATGTAGATTCTTCATC 	55
--------------------------------TATGATGTAGATTCTTCAT 	7
---------------------------------ATGATGTAGATTCTTCATC 	3
---------------------------------------------------------------------------TGGAGGATCTGCATCGTAAAC 	1

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Physcomitrella patens	GSM313214	TTATGATGTAGATTCTTCATC	AGAAGGGTCTACATCATAAAC	up	1	0

Secondary structure

ACAAAATCGTGTTGATCTAGATTATGATGTAGATTCTTCATCTGGAATTGAATTTCGATTTAAGAAGAAGGGTCTACATCATAAACTGGATGATTACGATTGTT
--------------ATCTAGATTATGATGTAGATT 	1
---------------TCTAGATTATGATGTAGATTC 	1
---------------------TTATGATGTAGATTCTTCATCT 	1
---------------------TTATGATGTAGATTCTTCATC 	163
---------------------TTATGATGTAGATTCTTCAT 	36
----------------------TATGATGTAGATTCTTCATC 	55
----------------------TATGATGTAGATTCTTCAT 	7
-----------------------ATGATGTAGATTCTTCATC 	3
------------------------TGATGTAGATTCTTCATCTGG 	3
-------------------------------GATTCTTCATCTGGAATTGAA 	1
--------------------------------ATTCTTCATCTGGAATTGAA 	1
------------------------------------------TGGAATTGAATTTCGATTTAAGA 	1
-----------------------------------------------------------------AGAAGGGTCTACATCATAAACT 	2
-----------------------------------------------------------------AGAAGGGTCTACATCATAAA 	8
-----------------------------------------------------------------AGAAGGGTCTACATCATAA 	1
-----------------------------------------------------------------AGAAGGGTCTACATCATAAAC 	32

Overlaps with: MNEST039559 MNEST039560
Overlaps with miRBase pre-miRNAs: ppt-MIR902h
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
13	Physcomitrella patens	GSM313217	TTATGATGTAGATTCTTCATC	TGGAGGATCTGCATCGTAAAC	up	0	0

Secondary structure

ATGACAACCTGCAGAGTTGTGTTGATCTGGATTATGATGTAGATTCTTCATCTATGAGTGAAGCTCAATCAAAGATGGAGGATCTGCATCGTAAACTGGATTATCACGACTATCGAACAACGGA
------------------------------ATTATGATGTAGATTCTTCA 	1
------------------------------ATTATGATGTAGATTCTTCAT 	1
-------------------------------TTATGATGTAGATTCTTCA 	3
-------------------------------TTATGATGTAGATTCTTCAT 	87
-------------------------------TTATGATGTAGATTCTTCATC 	190
--------------------------------TATGATGTAGATTCTTCATC 	39
--------------------------------TATGATGTAGATTCTTCAT 	17
---------------------------------ATGATGTAGATTCTTCATCT 	1

Overlaps with: MNEST039561 MNEST039562
Overlaps with miRBase pre-miRNAs: ppt-MIR902i
HuntMi prediction: true miRNA