miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTATTGCTCGAGAATACCCTT

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TTATTGCTCGAGAATACCCTT CGGTATTCCAGAGTTGATAATA down 3 1


Secondary structure

AAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATGCGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTA
---------------------------------------------------------TTATTGCTCGAGAATACCCTT 	17
---------------------------------------------------------TTATTGCTCGAGAATACCCTTT 	1

Overlaps with: MNEST038337
Overlaps with miRBase pre-miRNAs: cel-mir-234
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TTATTGCTCGAGAATACCCTT CGGTATTCCAGAGTTGATAATA down 3 1


Secondary structure

AAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATGCGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTA
------------CGGTATTCCAGAGTTGATAATA 	7
---------------------------------------------------------TTATTGCTCGAGAATACCCTT 	16

Overlaps with: MNEST038337
Overlaps with miRBase pre-miRNAs: cel-mir-234
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM378784 TTATTGCTCGAGAATACCCTT CGGTATTCCAGAGTTGATAATA down 3 1


Secondary structure

AAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATGCGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTA
---------------------------------------------------------TTATTGCTCGAGAATACCCTT 	22
---------------------------------------------------------TTATTGCTCGAGAATACCCT 	2

Overlaps with: MNEST038337
Overlaps with miRBase pre-miRNAs: cel-mir-234
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427346-5695 TTATTGCTCGAGAATACCCTT CGGTATTCCAGAGTTGATAATA down 3 1


Secondary structure

AAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATGCGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTA
------------CGGTATTCCAGAGTTGATAATA 	1
---------------------------------------------------------TTATTGCTCGAGAATACCCTT 	8
---------------------------------------------------------TTATTGCTCGAGAATACCCTTT 	1
---------------------------------------------------------TTATTGCTCGAGAATACCCT 	1

Overlaps with: MNEST038337
Overlaps with miRBase pre-miRNAs: cel-mir-234
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297751-9445 TTATTGCTCGAGAATACCCTT CGGTATTCCAGAGTTGATAATA down 3 1


Secondary structure

AAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATGCGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTA
---------------------------------------------------------TTATTGCTCGAGAATACCCT 	4
---------------------------------------------------------TTATTGCTCGAGAATACCCTT 	387

Overlaps with: MNEST038337
Overlaps with miRBase pre-miRNAs: cel-mir-234
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297752-9446 TTATTGCTCGAGAATACCCTT CGGTATTCCAGAGTTGATAATA down 3 1


Secondary structure

AAAATGATCAAACGGTATTCCAGAGTTGATAATAAAAATGCGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTA
--------------------------------------------------------ATTATTGCTCGAGAATACCCTT 	1
---------------------------------------------------------TTATTGCTCGAGAATACCCTT 	486
---------------------------------------------------------TTATTGCTCGAGAATACCCTTT 	9
---------------------------------------------------------TTATTGCTCGAGAATACCCT 	11
----------------------------------------------------------TATTGCTCGAGAATACCCTTT 	2
-----------------------------------------------------------ATTGCTCGAGAATACCCTT 	1

Overlaps with: MNEST038337
Overlaps with miRBase pre-miRNAs: cel-mir-234
HuntMi prediction: true miRNA