miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTCAAGTAATCCAGGATAGGCT

selected species: Danio rerio

10 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Danio rerio	GSM540644	TTCAAGTAATCCAGGATAGGCT	CCTATTCATGATTACTTGCACT	up	3	0

Secondary structure

GACTTGAGTGCTGGAAGTGGTTGTTCCCTTGTTCAAGTAATCCAGGATAGGCTGTCTGTCCTGGAGGCCTATTCATGATTACTTGCACTAGGTGGCAGCCGTTGCCCTTCATGGAAC
-------------------------------TTCAAGTAATCCAGGATAGGCT 	120
-------------------------------TTCAAGTAATCCAGGATAGGC 	11
-------------------------------TTCAAGTAATCCAGGATAGG 	17
-------------------------------TTCAAGTAATCCAGGATAG 	2
--------------------------------TCAAGTAATCCAGGATAGGCT 	1

Overlaps with: MNEST034234
Overlaps with miRBase pre-miRNAs: dre-mir-26a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Danio rerio	GSM540644	TTCAAGTAATCCAGGATAGGCT	CCTATTCGGGATGACTTGGTTC	up	3	0

Secondary structure

ACAGACAAGGCTTTGGCCTGGTTCAAGTAATCCAGGATAGGCTTGTGATGTCCGGAAAGCCTATTCGGGATGACTTGGTTCAGGAATGAGACCACCAGC
---------------------TTCAAGTAATCCAGGATAGGCTT 	8
---------------------TTCAAGTAATCCAGGATAGGCT 	120
---------------------TTCAAGTAATCCAGGATAGGC 	11
---------------------TTCAAGTAATCCAGGATAGG 	17
---------------------TTCAAGTAATCCAGGATAG 	2
----------------------TCAAGTAATCCAGGATAGGCTT 	1
----------------------TCAAGTAATCCAGGATAGGCT 	1
----------------------------------------------GATGTCCGGAAAGCCTATTCG 	1
------------------------------------------------------GAAAGCCTATTCGGGATGACTTGG 	1

Overlaps with: MNEST034233
Overlaps with miRBase pre-miRNAs: dre-mir-26a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Danio rerio	GSM540645	TTCAAGTAATCCAGGATAGGCT	CCTATTCATGATTACTTGCACT	up	3	0

Secondary structure

GACTTGAGTGCTGGAAGTGGTTGTTCCCTTGTTCAAGTAATCCAGGATAGGCTGTCTGTCCTGGAGGCCTATTCATGATTACTTGCACTAGGTGGCAGCCGTTGCCCTTCATGGAAC
-------------------------------TTCAAGTAATCCAGGATAGGCT 	1670
-------------------------------TTCAAGTAATCCAGGATAGGC 	109
-------------------------------TTCAAGTAATCCAGGATAGG 	228
-------------------------------TTCAAGTAATCCAGGATAG 	11
--------------------------------TCAAGTAATCCAGGATAGGCT 	8
----------------------------------AAGTAATCCAGGATAGGCT 	4

Overlaps with: MNEST034234
Overlaps with miRBase pre-miRNAs: dre-mir-26a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Danio rerio	GSM540645	TTCAAGTAATCCAGGATAGGCT	CCTATTCGGGATGACTTGGTTC	up	3	0

Secondary structure

ACAGACAAGGCTTTGGCCTGGTTCAAGTAATCCAGGATAGGCTTGTGATGTCCGGAAAGCCTATTCGGGATGACTTGGTTCAGGAATGAGACCACCAGC
---------------------TTCAAGTAATCCAGGATAGGCTT 	35
---------------------TTCAAGTAATCCAGGATAGGCT 	1670
---------------------TTCAAGTAATCCAGGATAGGC 	109
---------------------TTCAAGTAATCCAGGATAGG 	228
---------------------TTCAAGTAATCCAGGATAG 	11
----------------------TCAAGTAATCCAGGATAGGCTT 	4
----------------------TCAAGTAATCCAGGATAGGCT 	8
------------------------AAGTAATCCAGGATAGGCT 	4
-----------------------------------------------------------CCTATTCGGGATGACTTGGTTC 	20
-----------------------------------------------------------CCTATTCGGGATGACTTGGTT 	1

Overlaps with: MNEST034233
Overlaps with miRBase pre-miRNAs: dre-mir-26a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Danio rerio	GSM540642	TTCAAGTAATCCAGGATAGGCT	CCTATTCATGATTACTTGCACT	up	3	0

Secondary structure

GACTTGAGTGCTGGAAGTGGTTGTTCCCTTGTTCAAGTAATCCAGGATAGGCTGTCTGTCCTGGAGGCCTATTCATGATTACTTGCACTAGGTGGCAGCCGTTGCCCTTCATGGAAC
-------------------------------TTCAAGTAATCCAGGATAGGCTGTCT 	2
-------------------------------TTCAAGTAATCCAGGATAGGCT 	1643
-------------------------------TTCAAGTAATCCAGGATAGGC 	75
-------------------------------TTCAAGTAATCCAGGATAGG 	32
-------------------------------TTCAAGTAATCCAGGATAG 	4
--------------------------------TCAAGTAATCCAGGATAGGCT 	4
----------------------------------AAGTAATCCAGGATAGGCT 	2

Overlaps with: MNEST034234
Overlaps with miRBase pre-miRNAs: dre-mir-26a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Danio rerio	GSM540642	TTCAAGTAATCCAGGATAGGCT	CCTATTCGGGATGACTTGGTTC	up	3	0

Secondary structure

ACAGACAAGGCTTTGGCCTGGTTCAAGTAATCCAGGATAGGCTTGTGATGTCCGGAAAGCCTATTCGGGATGACTTGGTTCAGGAATGAGACCACCAGC
---------------------TTCAAGTAATCCAGGATAGGCTT 	205
---------------------TTCAAGTAATCCAGGATAGGCT 	1643
---------------------TTCAAGTAATCCAGGATAGGC 	75
---------------------TTCAAGTAATCCAGGATAGG 	32
---------------------TTCAAGTAATCCAGGATAG 	4
----------------------TCAAGTAATCCAGGATAGGCTT 	18
----------------------TCAAGTAATCCAGGATAGGCT 	4
------------------------AAGTAATCCAGGATAGGCT 	2
----------------------------AATCCAGGATAGGCTTGTGAT 	1
--------------------------------------------------------AAGCCTATTCGGGATGACTTGGT 	1
----------------------------------------------------------GCCTATTCGGGATGACTTGGTTC 	1
-----------------------------------------------------------CCTATTCGGGATGACTTGGTTC 	1
------------------------------------------------------------CTATTCGGGATGACTTGGTTC 	1
-------------------------------------------------------------TATTCGGGATGACTTGGTTC 	1

Overlaps with: MNEST034233
Overlaps with miRBase pre-miRNAs: dre-mir-26a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Danio rerio	GSM540643	TTCAAGTAATCCAGGATAGGCT	CCTATTCATGATTACTTGCACT	up	3	0

Secondary structure

GACTTGAGTGCTGGAAGTGGTTGTTCCCTTGTTCAAGTAATCCAGGATAGGCTGTCTGTCCTGGAGGCCTATTCATGATTACTTGCACTAGGTGGCAGCCGTTGCCCTTCATGGAAC
-------------------------------TTCAAGTAATCCAGGATAGGCT 	2588
-------------------------------TTCAAGTAATCCAGGATAGGC 	85
-------------------------------TTCAAGTAATCCAGGATAGG 	28
-------------------------------TTCAAGTAATCCAGGATAG 	2
--------------------------------TCAAGTAATCCAGGATAGGCT 	5
--------------------------------TCAAGTAATCCAGGATAGG 	2
---------------------------------CAAGTAATCCAGGATAGGCT 	1
----------------------------------AAGTAATCCAGGATAGGCT 	1

Overlaps with: MNEST034234
Overlaps with miRBase pre-miRNAs: dre-mir-26a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Danio rerio	GSM540643	TTCAAGTAATCCAGGATAGGCT	CCTATTCGGGATGACTTGGTTC	up	3	0

Secondary structure

ACAGACAAGGCTTTGGCCTGGTTCAAGTAATCCAGGATAGGCTTGTGATGTCCGGAAAGCCTATTCGGGATGACTTGGTTCAGGAATGAGACCACCAGC
---------------------TTCAAGTAATCCAGGATAGGCTT 	60
---------------------TTCAAGTAATCCAGGATAGGCT 	2588
---------------------TTCAAGTAATCCAGGATAGGC 	85
---------------------TTCAAGTAATCCAGGATAGG 	28
---------------------TTCAAGTAATCCAGGATAG 	2
----------------------TCAAGTAATCCAGGATAGGCTT 	5
----------------------TCAAGTAATCCAGGATAGGCT 	5
----------------------TCAAGTAATCCAGGATAGG 	2
-----------------------CAAGTAATCCAGGATAGGCT 	1
------------------------AAGTAATCCAGGATAGGCT 	1
----------------------------------------------------------GCCTATTCGGGATGACTTGGTT 	2
-----------------------------------------------------------CCTATTCGGGATGACTTGGTTC 	8
------------------------------------------------------------CTATTCGGGATGACTTGGTTC 	1

Overlaps with: MNEST034233
Overlaps with miRBase pre-miRNAs: dre-mir-26a-1
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Danio rerio	GSM540646	TTCAAGTAATCCAGGATAGGCT	CCTATTCATGATTACTTGCACT	up	3	0

Secondary structure

GACTTGAGTGCTGGAAGTGGTTGTTCCCTTGTTCAAGTAATCCAGGATAGGCTGTCTGTCCTGGAGGCCTATTCATGATTACTTGCACTAGGTGGCAGCCGTTGCCCTTCATGGAAC
-------------------------------TTCAAGTAATCCAGGATAGGCT 	13836
-------------------------------TTCAAGTAATCCAGGATAGGC 	375
-------------------------------TTCAAGTAATCCAGGATAGGCTG 	1
-------------------------------TTCAAGTAATCCAGGATAG 	9
-------------------------------TTCAAGTAATCCAGGATAGG 	532
--------------------------------TCAAGTAATCCAGGATAGGCT 	22
--------------------------------TCAAGTAATCCAGGATAGGC 	2
---------------------------------CAAGTAATCCAGGATAGGCT 	4
----------------------------------AAGTAATCCAGGATAGGCT 	2

Overlaps with: MNEST034234
Overlaps with miRBase pre-miRNAs: dre-mir-26a-2
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Danio rerio	GSM540646	TTCAAGTAATCCAGGATAGGCT	CCTATTCGGGATGACTTGGTTC	up	3	0

Secondary structure

ACAGACAAGGCTTTGGCCTGGTTCAAGTAATCCAGGATAGGCTTGTGATGTCCGGAAAGCCTATTCGGGATGACTTGGTTCAGGAATGAGACCACCAGC
---------------------TTCAAGTAATCCAGGATAGGCT 	13836
---------------------TTCAAGTAATCCAGGATAGGC 	375
---------------------TTCAAGTAATCCAGGATAGGCTT 	316
---------------------TTCAAGTAATCCAGGATAG 	9
---------------------TTCAAGTAATCCAGGATAGG 	532
----------------------TCAAGTAATCCAGGATAGGCT 	22
----------------------TCAAGTAATCCAGGATAGGC 	2
----------------------TCAAGTAATCCAGGATAGGCTT 	28
-----------------------CAAGTAATCCAGGATAGGCTT 	2
-----------------------CAAGTAATCCAGGATAGGCT 	4
------------------------AAGTAATCCAGGATAGGCT 	2
-----------------------------------------------------------CCTATTCGGGATGACTTGGTTC 	133
-----------------------------------------------------------CCTATTCGGGATGACTTGGTT 	7
------------------------------------------------------------CTATTCGGGATGACTTGGTTC 	1

Overlaps with: MNEST034233
Overlaps with miRBase pre-miRNAs: dre-mir-26a-1
HuntMi prediction: true miRNA