miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCAAGTAATCCAGGATAGGTT

selected species: Danio rerio



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TTCAAGTAATCCAGGATAGGTT CCTATTCTTGGTTACTTGTTTC up 3 0


Secondary structure

CTGCATTTGGCCTTTGCCTGGTTCAAGTAATCCAGGATAGGTTAGTTCCCACTAGTACGGCCTATTCTTGGTTACTTGTTTCAGGAGGAGGCTACGAGCA
--GCATTTGGCCTTTGCCTGG 	4
---------------------TTCAAGTAATCCAGGATAGGTTAGT 	2
---------------------TTCAAGTAATCCAGGATAGGTT 	75
---------------------TTCAAGTAATCCAGGATAGGT 	15
---------------------TTCAAGTAATCCAGGATAGG 	17
---------------------TTCAAGTAATCCAGGATAG 	2
----------------------TCAAGTAATCCAGGATAGGTT 	2
---------------------------TAATCCAGGATAGGTTAGTTCC 	2
------------------------------------------------------------CCTATTCTTGGTTACTTGTTTC 	1


Overlaps with: MNEST034236
Overlaps with miRBase pre-miRNAs: dre-mir-26b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TTCAAGTAATCCAGGATAGGTT CCTATTCTTGGTTACTTGTTTC up 3 0


Secondary structure

CTGCATTTGGCCTTTGCCTGGTTCAAGTAATCCAGGATAGGTTAGTTCCCACTAGTACGGCCTATTCTTGGTTACTTGTTTCAGGAGGAGGCTACGAGCA
--GCATTTGGCCTTTGCCTGG 	1
---------------------TTCAAGTAATCCAGGATAGGTTA 	2
---------------------TTCAAGTAATCCAGGATAGGTT 	1029
---------------------TTCAAGTAATCCAGGATAGGT 	46
---------------------TTCAAGTAATCCAGGATAGG 	228
---------------------TTCAAGTAATCCAGGATAG 	11
----------------------TCAAGTAATCCAGGATAGGTT 	3
------------------------AAGTAATCCAGGATAGGTT 	7
------------------------------------------------------------CCTATTCTTGGTTACTTGTTTC 	8


Overlaps with: MNEST034236
Overlaps with miRBase pre-miRNAs: dre-mir-26b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540642 TTCAAGTAATCCAGGATAGGTT CCTATTCTTGGTTACTTGTTTC up 3 0


Secondary structure

CTGCATTTGGCCTTTGCCTGGTTCAAGTAATCCAGGATAGGTTAGTTCCCACTAGTACGGCCTATTCTTGGTTACTTGTTTCAGGAGGAGGCTACGAGCA
--GCATTTGGCCTTTGCCTGG 	3
---------------------TTCAAGTAATCCAGGATAGGTTAGTT 	15
---------------------TTCAAGTAATCCAGGATAGGTTAGT 	17
---------------------TTCAAGTAATCCAGGATAGGTTAG 	7
---------------------TTCAAGTAATCCAGGATAGGTTA 	25
---------------------TTCAAGTAATCCAGGATAGGTT 	1317
---------------------TTCAAGTAATCCAGGATAGGT 	126
---------------------TTCAAGTAATCCAGGATAGG 	32
---------------------TTCAAGTAATCCAGGATAG 	4
----------------------TCAAGTAATCCAGGATAGGTTAGT 	1
----------------------TCAAGTAATCCAGGATAGGTTA 	1
-----------------------CAAGTAATCCAGGATAGGTTAGTTCC 	1
------------------------AAGTAATCCAGGATAGGTT 	2
-------------------------AGTAATCCAGGATAGGTTAGTTCCC 	1
-------------------------AGTAATCCAGGATAGGTTAGTTCC 	1
--------------------------GTAATCCAGGATAGGTTAGTT 	1
---------------------------TAATCCAGGATAGGTTAGTTCC 	1
---------------------------TAATCCAGGATAGGTTAGTTC 	24
---------------------------TAATCCAGGATAGGTTAGTT 	2
---------------------------TAATCCAGGATAGGTTAGT 	1
-----------------------------ATCCAGGATAGGTTAGTTCCCA 	1
------------------------------TCCAGGATAGGTTAGTTCCCA 	1
--------------------------------------------------ACTAGTACGGCCTATTCTTGGTT 	1
----------------------------------------------------TAGTACGGCCTATTCTTGGTTACT 	2
-------------------------------------------------------TACGGCCTATTCTTGGTTACTTGTTT 	1
------------------------------------------------------------CCTATTCTTGGTTACTTGTT 	1
------------------------------------------------------------CCTATTCTTGGTTACTTGT 	1


Overlaps with: MNEST034236
Overlaps with miRBase pre-miRNAs: dre-mir-26b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540643 TTCAAGTAATCCAGGATAGGTT CCTATTCTTGGTTACTTGTTTC up 3 0


Secondary structure

CTGCATTTGGCCTTTGCCTGGTTCAAGTAATCCAGGATAGGTTAGTTCCCACTAGTACGGCCTATTCTTGGTTACTTGTTTCAGGAGGAGGCTACGAGCA
---------------------TTCAAGTAATCCAGGATAGGTTAGT 	1
---------------------TTCAAGTAATCCAGGATAGGTTA 	16
---------------------TTCAAGTAATCCAGGATAGGTT 	1353
---------------------TTCAAGTAATCCAGGATAGGT 	36
---------------------TTCAAGTAATCCAGGATAGG 	28
---------------------TTCAAGTAATCCAGGATAG 	2
----------------------TCAAGTAATCCAGGATAGG 	2


Overlaps with: MNEST034236
Overlaps with miRBase pre-miRNAs: dre-mir-26b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Danio rerio GSM540646 TTCAAGTAATCCAGGATAGGTT CCTATTCTTGGTTACTTGTTTC up 3 0


Secondary structure

CTGCATTTGGCCTTTGCCTGGTTCAAGTAATCCAGGATAGGTTAGTTCCCACTAGTACGGCCTATTCTTGGTTACTTGTTTCAGGAGGAGGCTACGAGCA
--GCATTTGGCCTTTGCCTGG 	5
---------------------TTCAAGTAATCCAGGATAGGT 	198
---------------------TTCAAGTAATCCAGGATAGGTTAGT 	13
---------------------TTCAAGTAATCCAGGATAGGTTA 	19
---------------------TTCAAGTAATCCAGGATAGGTT 	7680
---------------------TTCAAGTAATCCAGGATAG 	9
---------------------TTCAAGTAATCCAGGATAGG 	532
----------------------TCAAGTAATCCAGGATAGGTT 	12
----------------------TCAAGTAATCCAGGATAGGT 	1
-----------------------CAAGTAATCCAGGATAGGTT 	4
------------------------AAGTAATCCAGGATAGGTT 	1
------------------------------------------------------------CCTATTCTTGGTTACTTGTTTC 	37
------------------------------------------------------------CCTATTCTTGGTTACTTGTTTCA 	1
------------------------------------------------------------CCTATTCTTGGTTACTTGTTT 	1


Overlaps with: MNEST034236
Overlaps with miRBase pre-miRNAs: dre-mir-26b
HuntMi prediction: true miRNA