miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCACAGTGGCTAAGTTCCGCT

selected species: Danio rerio



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540642 TTCACAGTGGCTAAGTTCCGCT CAGGACTTAGCTCACTCTGTGAACA down 3 3


Secondary structure

TCTGCTGAAGTTTCGTGAGGTGCAGGACTTAGCTCACTCTGTGAACAGATCTCGGATATCCTATGTTCACAGTGGCTAAGTTCCGCTCCTCTGAGGCCCACACTCG
----CTGAAGTTTCGTGAGGTGC 	1
----------TTTCGTGAGGTGCAGGACT 	1
----------------------------------------------------------TCCTATGTTCACAGTGGCTAAG 	1
-------------------------------------------------------------TATGTTCACAGTGGCTAAGTTC 	1
--------------------------------------------------------------ATGTTCACAGTGGCTAAGTTC 	1
-----------------------------------------------------------------TTCACAGTGGCTAAGTTCCGCT 	84
-----------------------------------------------------------------TTCACAGTGGCTAAGTTCCGC 	23
-----------------------------------------------------------------TTCACAGTGGCTAAGTTCCG 	2
--------------------------------------------------------------------ACAGTGGCTAAGTTCCGCT 	1

Overlaps with: MNEST034237
Overlaps with miRBase pre-miRNAs: dre-mir-27a
HuntMi prediction: true miRNA