miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCACAGTGGCTAAGTTCTGC

selected species: Gallus gallus



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Gallus gallus GSM523740_broiler_clean_reads_field_16-30 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GGAGACCTCTCTGGTGAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGTTTCCCTCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
----------------------AGAGCTTAGCTGATTGGTGAACA 	28
----------------------AGAGCTTAGCTGATTGGTGAAC 	4
----------------------AGAGCTTAGCTGATTGGTGAACAG 	15
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	12
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	9
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	16
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	16
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	328
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	17
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	1

Overlaps with: MNEST025910
Overlaps with miRBase pre-miRNAs: gga-mir-27b
HuntMi prediction: true miRNA