miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTCACAGTGGCTAAGTTCTGC

selected species: Homo sapiens



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Homo sapiens GSM494810_Normal_2 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
----------------------AGAGCTTAGCTGATTGGTGAACA 	3
----------------------AGAGCTTAGCTGATTGGTGAAC 	2
----------------------AGAGCTTAGCTGATTGGTGAA 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	3
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	7
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	136
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	569
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	54
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	66
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	1
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCAC 	1

Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Homo sapiens GSM494809_Normal_1 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAACA 	1
----------------------AGAGCTTAGCTGATTGGTGAACA 	23
----------------------AGAGCTTAGCTGATTGGTGAAC 	5
----------------------AGAGCTTAGCTGATTGGTGAACAG 	3
----------------------AGAGCTTAGCTGATTGGTGAA 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	6
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	116
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	712
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	55
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	63
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	2
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	1

Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Homo sapiens GSM337570 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	121
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	27
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	7

Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Homo sapiens GSM494811_K562 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAACA 	3
----------------------AGAGCTTAGCTGATTGGTGAACA 	73
----------------------AGAGCTTAGCTGATTGGTGAAC 	6
----------------------AGAGCTTAGCTGATTGGTGA 	2
----------------------AGAGCTTAGCTGATTGGTGAA 	1
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	53
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	227
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	21
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	32

Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Homo sapiens GSM494812_HL60 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAACA 	3
----------------------AGAGCTTAGCTGATTGGTGAACA 	58
----------------------AGAGCTTAGCTGATTGGTGAAC 	9
----------------------AGAGCTTAGCTGATTGGTGAA 	2
----------------------AGAGCTTAGCTGATTGGTGA 	2
----------------------AGAGCTTAGCTGATTGGTGAACAG 	1
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	4
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	35
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	147
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	8
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	9

Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA