miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTCACAGTGGCTAAGTTCTGC

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
--TGACCTCTCTAACAAGGTGC 	2
---GACCTCTCTAACAAGGTGC 	4
---------------------CAGAGCTTAGCTGATTGGTGA 	1
---------------------CAGAGCTTAGCTGATTGGTGAAC 	4
---------------------CAGAGCTTAGCTGATTGGTGAACA 	1
----------------------AGAGCTTAGCTGATTGGTGAA 	2
----------------------AGAGCTTAGCTGATTGGTGAACAG 	9
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	15
----------------------AGAGCTTAGCTGATTGGTGA 	3
----------------------AGAGCTTAGCTGATTGGTG 	1
----------------------AGAGCTTAGCTGATTGGTGAACA 	10
----------------------AGAGCTTAGCTGATTGGTGAAC 	51
-----------------------GAGCTTAGCTGATTGGTGAACAGT 	1
---------------------------------------------GTGATTGGTTTCCGCTTTG 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	7
---------------------------------------------------------------GTTCACAGTGGCTAAGTTC 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	184
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	4
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	497
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	345
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	5
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	14834
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1920
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	7
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	136
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	7
------------------------------------------------------------------CACAGTGGCTAAGTTCTGCA 	1
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	25
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCA 	1


Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAAC 	1
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	2
----------------------AGAGCTTAGCTGATTGGTGAAC 	13
----------------------AGAGCTTAGCTGATTGGTGAACAG 	2
-----------------------GAGCTTAGCTGATTGGTGAA 	1
------------------------AGCTTAGCTGATTGGTGAACA 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	3
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	33
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	176
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	4078
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	610
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	173
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	39
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	3
------------------------------------------------------------------CACAGTGGCTAAGTTCTGCA 	1
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	2
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCA 	1


Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
-ATGACCTCTCTAACAAGGTGC 	1
---------------------CAGAGCTTAGCTGATTGGTGAAC 	5
----------------------AGAGCTTAGCTGATTGGTGA 	3
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	8
----------------------AGAGCTTAGCTGATTGGTGAACA 	2
----------------------AGAGCTTAGCTGATTGGTGAAC 	60
----------------------AGAGCTTAGCTGATTGGTGAA 	2
----------------------AGAGCTTAGCTGATTGGTGAACAG 	13
------------------------AGCTTAGCTGATTGGTGAACAGTG 	1
---------------------------------------------GTGATTGGTTTCCGCTTTG 	1
-------------------------------------------------------------TTGTTCACAGTGGCTAAGTTCT 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	5
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	10
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	167
---------------------------------------------------------------GTTCACAGTGGCTAAGTTC 	2
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	689
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	3
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	16673
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1853
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	346
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	180
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	6
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	9
------------------------------------------------------------------CACAGTGGCTAAGTTCTGCA 	1
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	24


Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
GATGACCTCTCTAACAAGGTGC 	1
--TGACCTCTCTAACAAGGTGC 	1
---GACCTCTCTAACAAGGTGC 	1
---------------------CAGAGCTTAGCTGATTGGTGAAC 	7
---------------------CAGAGCTTAGCTGATTGGTGA 	1
---------------------CAGAGCTTAGCTGATTGGTGAACA 	2
----------------------AGAGCTTAGCTGATTGGTGAA 	5
----------------------AGAGCTTAGCTGATTGGTG 	2
----------------------AGAGCTTAGCTGATTGGTGAACA 	7
----------------------AGAGCTTAGCTGATTGGTGAAC 	112
----------------------AGAGCTTAGCTGATTGGTGAACAG 	9
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	32
----------------------AGAGCTTAGCTGATTGGTGA 	4
-----------------------GAGCTTAGCTGATTGGTGAAC 	1
-------------------------GCTTAGCTGATTGGTGAACA 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	20
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	10
---------------------------------------------------------------GTTCACAGTGGCTAAGTTC 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	262
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	7
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	322
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	8
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	505
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	11606
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1804
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	8
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	3
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	27
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCACC 	1


Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539867 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAACA 	45
---------------------CAGAGCTTAGCTGATTGGTGAAC 	5
---------------------CAGAGCTTAGCTGATTGGTG 	1
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	11
----------------------AGAGCTTAGCTGATTGGTGAACAG 	31
----------------------AGAGCTTAGCTGATTGGTGAACA 	462
----------------------AGAGCTTAGCTGATTGGTGAAC 	85
----------------------AGAGCTTAGCTGATTGGTGAA 	38
----------------------AGAGCTTAGCTGATTGGTGA 	9
----------------------AGAGCTTAGCTGATTGGTG 	8
-----------------------GAGCTTAGCTGATTGGTGAACAG 	1
------------------------AGCTTAGCTGATTGGTGAACA 	2
---------------------------------------------GTGATTGGTTTCCGCTTTG 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	24
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	31
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	14
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	8
---------------------------------------------------------------GTTCACAGTGGCTAAGTTC 	4
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCACC 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	3
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	695
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	1303
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	295
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	345
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	10
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	3
------------------------------------------------------------------CACAGTGGCTAAGTTCTGCA 	3
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCA 	2


Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM527279-2112 TTCACAGTGGCTAAGTTCTGC AGAGCTTAGCTGATTGGTGAACA down 2 2


Secondary structure

GATGACCTCTCTAACAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
GATGACCTCTCTAACAAGGTGC 	1
-ATGACCTCTCTAACAAGGTGC 	1
--TGACCTCTCTAACAAGGTGC 	2
---GACCTCTCTAACAAGGTGC 	1
---------------------CAGAGCTTAGCTGATTGGTGA 	1
---------------------CAGAGCTTAGCTGATTGGTGAAC 	2
----------------------AGAGCTTAGCTGATTGGTGAA 	3
----------------------AGAGCTTAGCTGATTGGTGAACAG 	9
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	11
----------------------AGAGCTTAGCTGATTGGTGA 	5
----------------------AGAGCTTAGCTGATTGGTGAACA 	8
----------------------AGAGCTTAGCTGATTGGTGAAC 	56
------------------------AGCTTAGCTGATTGGTGAACA 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	18
---------------------------------------------------------------GTTCACAGTGGCTAAGTTC 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	173
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	8
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	866
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	612
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	2
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	20112
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	2386
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	1
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	79
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	1
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	16
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCA 	2


Overlaps with: MNEST027674 MNEST028384 MNEST030775 MNEST032681
Overlaps with miRBase pre-miRNAs: hsa-mir-27b mml-mir-27b ptr-mir-27b ppy-mir-27b mmu-mir-27b cgr-mir-27b rno-mir-27b
HuntMi prediction: true miRNA