miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTCACAGTGGCTAAGTTCTGC

selected species: Sus scrofa

5 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Sus scrofa	GSM636844	TTCACAGTGGCTAAGTTCTGC	AGAGCTTAGCTGATTGGTGAACA	down	2	2

Secondary structure

GACGACCTCTCTGACGAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAAC 	1
----------------------AGAGCTTAGCTGATTGGTGAACA 	1
----------------------AGAGCTTAGCTGATTGGTGAAC 	51
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	2
----------------------AGAGCTTAGCTGATTGGTGA 	3
----------------------AGAGCTTAGCTGATTGGTGAACAG 	4
--------------------------------TGATTGGTGAACAGTGACTGG 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	7
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	5
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	2378
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	94
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	140
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1413
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	16
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	6
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	3
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	12

Overlaps with: MNEST033932
Overlaps with miRBase pre-miRNAs: cfa-mir-27b eca-mir-27b bta-mir-27b ssc-mir-27b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Sus scrofa	GSM636847	TTCACAGTGGCTAAGTTCTGC	AGAGCTTAGCTGATTGGTGAACA	down	2	2

Secondary structure

GACGACCTCTCTGACGAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAAC 	1
----------------------AGAGCTTAGCTGATTGGTGAACA 	4
----------------------AGAGCTTAGCTGATTGGTGAAC 	27
----------------------AGAGCTTAGCTGATTGGTGAA 	1
----------------------AGAGCTTAGCTGATTGGTGAACAG 	2
----------------------AGAGCTTAGCTGATTGGTGA 	2
-------------------------------CTGATTGGTGAACAGTGAC 	1
--------------------------------TGATTGGTGAACAGTGACTGGTTT 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	10
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	2711
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	65
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1264
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	129
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	16
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	3
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	2
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	8

Overlaps with: MNEST033932
Overlaps with miRBase pre-miRNAs: cfa-mir-27b eca-mir-27b bta-mir-27b ssc-mir-27b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Sus scrofa	GSM636849	TTCACAGTGGCTAAGTTCTGC	AGAGCTTAGCTGATTGGTGAACA	down	2	2

Secondary structure

GACGACCTCTCTGACGAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAAC 	3
----------------------AGAGCTTAGCTGATTGGTGAACA 	3
----------------------AGAGCTTAGCTGATTGGTGAAC 	21
----------------------AGAGCTTAGCTGATTGGTGAA 	1
----------------------AGAGCTTAGCTGATTGGTGAACAG 	9
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	30
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	2
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	5594
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	70
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	1
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	221
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1025
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	2
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	36
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	4
------------------------------------------------------------------CACAGTGGCTAAGTTCTGCA 	3
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	22

Overlaps with: MNEST033932
Overlaps with miRBase pre-miRNAs: cfa-mir-27b eca-mir-27b bta-mir-27b ssc-mir-27b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Sus scrofa	GSM636848	TTCACAGTGGCTAAGTTCTGC	AGAGCTTAGCTGATTGGTGAACA	down	2	2

Secondary structure

GACGACCTCTCTGACGAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAAC 	5
---------------------CAGAGCTTAGCTGATTGGTGAACA 	5
----------------------AGAGCTTAGCTGATTGGTGAACA 	10
----------------------AGAGCTTAGCTGATTGGTGAAC 	71
----------------------AGAGCTTAGCTGATTGGTGAA 	3
----------------------AGAGCTTAGCTGATTGGTGAACAG 	15
----------------------AGAGCTTAGCTGATTGGTG 	1
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	1
----------------------AGAGCTTAGCTGATTGGTGA 	4
---------------------------------------------GTGACTGGTTTCCGCTTTG 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	6
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	3
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	39
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	282
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	18447
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCAC 	3
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	4988
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	824
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	89
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	26
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGCA 	5
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	53
-------------------------------------------------------------------ACAGTGGCTAAGTTCTGCA 	1

Overlaps with: MNEST033932
Overlaps with miRBase pre-miRNAs: cfa-mir-27b eca-mir-27b bta-mir-27b ssc-mir-27b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Sus scrofa	GSM636846	TTCACAGTGGCTAAGTTCTGC	AGAGCTTAGCTGATTGGTGAACA	down	2	2

Secondary structure

GACGACCTCTCTGACGAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAAGGTGAGA
---------------------CAGAGCTTAGCTGATTGGTGAAC 	2
---------------------CAGAGCTTAGCTGATTGGTGA 	1
----------------------AGAGCTTAGCTGATTGGTGAACAGT 	2
----------------------AGAGCTTAGCTGATTGGTGAACA 	1
----------------------AGAGCTTAGCTGATTGGTGAAC 	22
----------------------AGAGCTTAGCTGATTGGTGAACAG 	14
----------------------AGAGCTTAGCTGATTGGTG 	1
-----------------------GAGCTTAGCTGATTGGTGAAC 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGCA 	2
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCT 	1
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTGC 	42
---------------------------------------------------------------GTTCACAGTGGCTAAGTTCTG 	4
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGC 	6145
----------------------------------------------------------------TTCACAGTGGCTAAGTTCT 	79
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTGCA 	226
----------------------------------------------------------------TTCACAGTGGCTAAGTTCTG 	1145
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTGC 	57
-----------------------------------------------------------------TCACAGTGGCTAAGTTCTG 	5
------------------------------------------------------------------CACAGTGGCTAAGTTCTGCA 	2
------------------------------------------------------------------CACAGTGGCTAAGTTCTGC 	27

Overlaps with: MNEST033932
Overlaps with miRBase pre-miRNAs: cfa-mir-27b eca-mir-27b bta-mir-27b ssc-mir-27b
HuntMi prediction: true miRNA