miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTCATCAGGCCATAGCTGTCCA

selected species: Caenorhabditis elegans



3 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427332-5684 TTCATCAGGCCATAGCTGTCCA GATGGTTGTGCTCTGAGGAAAT down 2 0


Secondary structure

CCTATCTATATTCTGGTAAGTTTTTTTTTGCATCTGCCAAACCGCCCGTTTGGATGGTTGTGCTCTGAGGAAATACGCACAGAATGTCATTTCATCAGGCCATAGCTGTCCAAATTGGTATAGAGTTTGGAATGTTGAATCAGTTATTGGAGTTAGACAAA
----------------------------------------------------GATGGTTGTGCTCTGAGGAAA 	1
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCA 	9


Overlaps with: MNEST038313 MNEST038314
Overlaps with miRBase pre-miRNAs: cel-mir-77
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM297751-9445 TTCATCAGGCCATAGCTGTCCA GATGGTTGTGCTCTGAGGAAAT down 2 0


Secondary structure

CCTATCTATATTCTGGTAAGTTTTTTTTTGCATCTGCCAAACCGCCCGTTTGGATGGTTGTGCTCTGAGGAAATACGCACAGAATGTCATTTCATCAGGCCATAGCTGTCCAAATTGGTATAGAGTTTGGAATGTTGAATCAGTTATTGGAGTTAGACAAA
----------------------------------------------------GATGGTTGTGCTCTGAGGA 	13
----------------------------------------------------GATGGTTGTGCTCTGAGGAAAT 	408
----------------------------------------------------GATGGTTGTGCTCTGAGGAAA 	59
----------------------------------------------------GATGGTTGTGCTCTGAGGAA 	29
----------------------------------------------------GATGGTTGTGCTCTGAGGAAATA 	2
-------------------------------------------------------GGTTGTGCTCTGAGGAAAT 	2
-----------------------------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCC 	1
-----------------------------------------------------------------------------------------TTTCATCAGGCCATAGCTGTC 	2
-----------------------------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCCA 	3
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCA 	42588
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCC 	576
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGT 	17
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAA 	221
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTC 	77
-------------------------------------------------------------------------------------------TCATCAGGCCATAGCTGTCCAAA 	1
-------------------------------------------------------------------------------------------TCATCAGGCCATAGCTGTCCA 	51
--------------------------------------------------------------------------------------------CATCAGGCCATAGCTGTCCA 	53
--------------------------------------------------------------------------------------------CATCAGGCCATAGCTGTCC 	1
---------------------------------------------------------------------------------------------ATCAGGCCATAGCTGTCCA 	170
----------------------------------------------------------------------------------------------TCAGGCCATAGCTGTCCAA 	1


Overlaps with: MNEST038313 MNEST038314
Overlaps with miRBase pre-miRNAs: cel-mir-77
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM297752-9446 TTCATCAGGCCATAGCTGTCCA GATGGTTGTGCTCTGAGGAAAT down 2 0


Secondary structure

CCTATCTATATTCTGGTAAGTTTTTTTTTGCATCTGCCAAACCGCCCGTTTGGATGGTTGTGCTCTGAGGAAATACGCACAGAATGTCATTTCATCAGGCCATAGCTGTCCAAATTGGTATAGAGTTTGGAATGTTGAATCAGTTATTGGAGTTAGACAAA
----------------------------------------------------GATGGTTGTGCTCTGAGGA 	10
----------------------------------------------------GATGGTTGTGCTCTGAGGAAA 	79
----------------------------------------------------GATGGTTGTGCTCTGAGGAAAT 	535
----------------------------------------------------GATGGTTGTGCTCTGAGGAA 	39
----------------------------------------------------GATGGTTGTGCTCTGAGGAAATA 	2
-----------------------------------------------------ATGGTTGTGCTCTGAGGAA 	1
------------------------------------------------------TGGTTGTGCTCTGAGGAAAT 	1
-----------------------------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCC 	8
-----------------------------------------------------------------------------------------TTTCATCAGGCCATAGCTGTCCA 	9
-----------------------------------------------------------------------------------------TTTCATCAGGCCATAGCTGT 	2
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCAA 	368
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCCA 	89367
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTCC 	1853
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGT 	87
------------------------------------------------------------------------------------------TTCATCAGGCCATAGCTGTC 	232
-------------------------------------------------------------------------------------------TCATCAGGCCATAGCTGTCCA 	108
-------------------------------------------------------------------------------------------TCATCAGGCCATAGCTGTCC 	2
--------------------------------------------------------------------------------------------CATCAGGCCATAGCTGTCCAA 	1
--------------------------------------------------------------------------------------------CATCAGGCCATAGCTGTCCA 	64
--------------------------------------------------------------------------------------------CATCAGGCCATAGCTGTCC 	1
---------------------------------------------------------------------------------------------ATCAGGCCATAGCTGTCCA 	325
----------------------------------------------------------------------------------------------TCAGGCCATAGCTGTCCAA 	1


Overlaps with: MNEST038313 MNEST038314
Overlaps with miRBase pre-miRNAs: cel-mir-77
HuntMi prediction: true miRNA