miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTCATTCGGCTGTCCAGATGTA

selected species: Mus musculus



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TTCATTCGGCTGTCCAGATGTA CATCTGGGCAACTGATTGAACT up 2 0


Secondary structure

GGAGAGATGAGGGGTTAAGAGTTCATTCGGCTGTCCAGATGTACCCAAGTACCCTGTTATTTGGCAATACATACATCTGGGCAACTGATTGAACTTTTCGCTTCTCTTGACTC
---------------------TTCATTCGGCTGTCCAGATG 	146
---------------------TTCATTCGGCTGTCCAGATGTAC 	4
---------------------TTCATTCGGCTGTCCAGATGTA 	1249
---------------------TTCATTCGGCTGTCCAGATGT 	329
---------------------TTCATTCGGCTGTCCAGATGTACC 	1
---------------------TTCATTCGGCTGTCCAGATGTACCC 	1
---------------------TTCATTCGGCTGTCCAGAT 	9
----------------------TCATTCGGCTGTCCAGATGTA 	4
----------------------TCATTCGGCTGTCCAGATGT 	2
-----------------------CATTCGGCTGTCCAGATGTA 	3
-----------------------CATTCGGCTGTCCAGATGT 	2
------------------------ATTCGGCTGTCCAGATGTA 	2
----------------------------------------------------------------------ATACATCTGGGCAACTGATTGAACT 	1
-------------------------------------------------------------------------CATCTGGGCAACTGATTGA 	3
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACT 	350
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAA 	2
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAAC 	68
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACTTT 	2
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACTT 	4
--------------------------------------------------------------------------ATCTGGGCAACTGATTGAACT 	7
--------------------------------------------------------------------------ATCTGGGCAACTGATTGAAC 	2
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACT 	1
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACTT 	1
---------------------------------------------------------------------------TCTGGGCAACTGATTGAAC 	1


Overlaps with: MNEST032402
Overlaps with miRBase pre-miRNAs: mmu-mir-1298
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527276 TTCATTCGGCTGTCCAGATGTA CATCTGGGCAACTGATTGAACT up 2 0


Secondary structure

GGAGAGATGAGGGGTTAAGAGTTCATTCGGCTGTCCAGATGTACCCAAGTACCCTGTTATTTGGCAATACATACATCTGGGCAACTGATTGAACTTTTCGCTTCTCTTGACTC
---------------------TTCATTCGGCTGTCCAGAT 	34
---------------------TTCATTCGGCTGTCCAGATG 	399
---------------------TTCATTCGGCTGTCCAGATGTACC 	3
---------------------TTCATTCGGCTGTCCAGATGTA 	4623
---------------------TTCATTCGGCTGTCCAGATGTACCC 	1
---------------------TTCATTCGGCTGTCCAGATGTAC 	20
---------------------TTCATTCGGCTGTCCAGATGT 	956
----------------------TCATTCGGCTGTCCAGATGTA 	12
----------------------TCATTCGGCTGTCCAGATGT 	3
-----------------------CATTCGGCTGTCCAGATGT 	3
-----------------------CATTCGGCTGTCCAGATGTA 	10
------------------------ATTCGGCTGTCCAGATGTA 	4
-----------------------------------------------------------------------TACATCTGGGCAACTGATTGAACT 	1
------------------------------------------------------------------------ACATCTGGGCAACTGATTGAACT 	1
------------------------------------------------------------------------ACATCTGGGCAACTGATTGAACTT 	1
-------------------------------------------------------------------------CATCTGGGCAACTGATTGA 	7
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACTTT 	1
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACT 	782
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACTT 	9
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAA 	8
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAAC 	226
--------------------------------------------------------------------------ATCTGGGCAACTGATTGAACTT 	1
--------------------------------------------------------------------------ATCTGGGCAACTGATTGAACT 	17
--------------------------------------------------------------------------ATCTGGGCAACTGATTGAA 	1
--------------------------------------------------------------------------ATCTGGGCAACTGATTGAAC 	6
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACTTT 	1
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACTT 	2
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACT 	2


Overlaps with: MNEST032402
Overlaps with miRBase pre-miRNAs: mmu-mir-1298
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM539869 TTCATTCGGCTGTCCAGATGTA CATCTGGGCAACTGATTGAACT up 2 0


Secondary structure

GGAGAGATGAGGGGTTAAGAGTTCATTCGGCTGTCCAGATGTACCCAAGTACCCTGTTATTTGGCAATACATACATCTGGGCAACTGATTGAACTTTTCGCTTCTCTTGACTC
---------------------TTCATTCGGCTGTCCAGATGTACCC 	1
---------------------TTCATTCGGCTGTCCAGAT 	391
---------------------TTCATTCGGCTGTCCAGATGTAC 	4
---------------------TTCATTCGGCTGTCCAGATGTA 	1552
---------------------TTCATTCGGCTGTCCAGATGT 	433
---------------------TTCATTCGGCTGTCCAGATG 	4
----------------------TCATTCGGCTGTCCAGATGTAC 	1
----------------------TCATTCGGCTGTCCAGATGTA 	1
-----------------------CATTCGGCTGTCCAGATGTA 	2
------------------------ATTCGGCTGTCCAGATGTA 	1
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACTT 	2
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAACT 	11
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAAC 	8
-------------------------------------------------------------------------CATCTGGGCAACTGATTGAA 	1
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACTTT 	1
---------------------------------------------------------------------------TCTGGGCAACTGATTGAACTT 	1


Overlaps with: MNEST032402
Overlaps with miRBase pre-miRNAs: mmu-mir-1298
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM539870 TTCATTCGGCTGTCCAGATGTA CATCTGGGCAACTGATTGAACT up 2 0


Secondary structure

GGAGAGATGAGGGGTTAAGAGTTCATTCGGCTGTCCAGATGTACCCAAGTACCCTGTTATTTGGCAATACATACATCTGGGCAACTGATTGAACTTTTCGCTTCTCTTGACTC
---------------------TTCATTCGGCTGTCCAGATGTACC 	1
---------------------TTCATTCGGCTGTCCAGATGTAC 	1
---------------------TTCATTCGGCTGTCCAGATGTA 	645
---------------------TTCATTCGGCTGTCCAGATGT 	146
---------------------TTCATTCGGCTGTCCAGATG 	3
---------------------TTCATTCGGCTGTCCAGAT 	138
----------------------TCATTCGGCTGTCCAGATGTA 	2


Overlaps with: MNEST032402
Overlaps with miRBase pre-miRNAs: mmu-mir-1298
HuntMi prediction: true miRNA