miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCACAGCTTTCTTGAACT

selected species: Oryza sativa



24 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Oryza sativa GSM693280 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACTG 	45
---------------------TTCCACAGCTTTCTTGAAC 	6
---------------------TTCCACAGCTTTCTTGAACT 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	1
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	8


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Oryza sativa GSM693280 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	45
-------------------------------TTCCACAGCTTTCTTGAAC 	6
-------------------------------TTCCACAGCTTTCTTGAACT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	8
------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCTGTGGGAAATTGC 	9
-------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAGCTGTGGGAAATTGCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAAATTGCAGAGAGAGACC 	12


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Oryza sativa GSM520638-18676 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACT 	296
---------------------TTCCACAGCTTTCTTGAAC 	20
---------------------TTCCACAGCTTTCTTGAACTG 	45
----------------------TCCACAGCTTTCTTGAACTGC 	1
----------------------TCCACAGCTTTCTTGAACTG 	2
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	3
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	2
---------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAATTACAGA 	1
----------------------------------------------------------------------------------------------------------AAGCTGTGGGAAATTACAGAG 	2


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Oryza sativa GSM520638-18676 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
---------------------------GATCTTCCACAGCTTTCTTGAACT 	1
-------------------------------TTCCACAGCTTTCTTGAACT 	296
-------------------------------TTCCACAGCTTTCTTGAAC 	20
-------------------------------TTCCACAGCTTTCTTGAACTG 	45
--------------------------------TCCACAGCTTTCTTGAACTGC 	1
--------------------------------TCCACAGCTTTCTTGAACTG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	3
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	2


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Oryza sativa GSM520638-18676 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGAC
--------------------TTTCCACAGCTTTCTTGAACTT 	41
--------------------TTTCCACAGCTTTCTTGAACT 	25
--------------------TTTCCACAGCTTTCTTGAAC 	2
---------------------TTCCACAGCTTTCTTGAACTTC 	4
---------------------TTCCACAGCTTTCTTGAACT 	296
---------------------TTCCACAGCTTTCTTGAAC 	20
---------------------TTCCACAGCTTTCTTGAACTT 	4969
----------------------TCCACAGCTTTCTTGAACTT 	14
-----------------------CCACAGCTTTCTTGAACTT 	13
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAG 	13
--------------------------------------------------------------------------------------------------------------------------GGGTCAAGAAAGCTGTGGGAAG 	1
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAGA 	6
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGA 	1
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	39
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAGAAA 	1
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	46
-----------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAGAA 	1
-----------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAG 	1
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGCA 	1
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATG 	3
-----------------------------------------------------------------------------------------------------------------------------------AAGCTGTGGGAAGAAATGGCA 	1


Overlaps with: MNEST042028 MNEST048947
Overlaps with miRBase pre-miRNAs: osa-MIR396c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Oryza sativa GSM686040-31373 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACTG 	23
---------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	4
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	4


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Oryza sativa GSM686040-31373 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	23
-------------------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	4


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Oryza sativa GSM520640-18679 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
-------------------TCTTCCACAGCTTTCTTGAACT 	1
--------------------CTTCCACAGCTTTCTTGAACTG 	2
--------------------CTTCCACAGCTTTCTTGAAC 	1
---------------------TTCCACAGCTTTCTTGAACT 	288
---------------------TTCCACAGCTTTCTTGAAC 	19
---------------------TTCCACAGCTTTCTTGAACTGC 	1
---------------------TTCCACAGCTTTCTTGAACTG 	40
----------------------TCCACAGCTTTCTTGAACT 	1
----------------------TCCACAGCTTTCTTGAACTG 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAA 	2
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	3
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	5
---------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAATTACAGA 	1
----------------------------------------------------------------------------------------------------------AAGCTGTGGGAAATTACAGAGAGA 	2


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Oryza sativa GSM520640-18679 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
----------------------------ATCTTCCACAGCTTTCTTGAACT 	1
-----------------------------TCTTCCACAGCTTTCTTGAACT 	1
------------------------------CTTCCACAGCTTTCTTGAACTG 	2
------------------------------CTTCCACAGCTTTCTTGAAC 	1
-------------------------------TTCCACAGCTTTCTTGAACT 	288
-------------------------------TTCCACAGCTTTCTTGAAC 	19
-------------------------------TTCCACAGCTTTCTTGAACTGC 	1
-------------------------------TTCCACAGCTTTCTTGAACTG 	40
--------------------------------TCCACAGCTTTCTTGAACT 	1
--------------------------------TCCACAGCTTTCTTGAACTG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	3
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	5


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Oryza sativa GSM520640-18679 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGAC
--------------------TTTCCACAGCTTTCTTGAACTT 	19
--------------------TTTCCACAGCTTTCTTGAACT 	25
--------------------TTTCCACAGCTTTCTTGAAC 	2
---------------------TTCCACAGCTTTCTTGAACTTC 	3
---------------------TTCCACAGCTTTCTTGAACT 	288
---------------------TTCCACAGCTTTCTTGAAC 	19
---------------------TTCCACAGCTTTCTTGAACTTCT 	3
---------------------TTCCACAGCTTTCTTGAACTT 	4696
----------------------TCCACAGCTTTCTTGAACT 	1
----------------------TCCACAGCTTTCTTGAACTT 	12
-----------------------CCACAGCTTTCTTGAACTT 	4
---------------------------AGCTTTCTTGAACTTCTCTTGTG 	1
------------------------------TTTCTTGAACTTCTCTTGTG 	1
---------------------------------------------------------------------------------------------------------------------GAAGAGGGTCAAGAAAGCTGT 	1
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAGA 	22
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAG 	5
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGA 	1
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAA 	1
--------------------------------------------------------------------------------------------------------------------------GGGTCAAGAAAGCTGTGGGAAGAA 	1
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAGA 	2
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGA 	1
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	33
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAG 	3
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	105
-----------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAG 	2
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAAT 	3
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATG 	9
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGCA 	37
---------------------------------------------------------------------------------------------------------------------------------GAAAGCTGTGGGAAGAAATGGCA 	2
-------------------------------------------------------------------------------------------------------------------------------------GCTGTGGGAAGAAATGGCA 	1


Overlaps with: MNEST042028 MNEST048947
Overlaps with miRBase pre-miRNAs: osa-MIR396c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
11 Oryza sativa GSM520634-18667 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACTG 	38
---------------------TTCCACAGCTTTCTTGAACT 	2
---------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1
------------------------------------------------------------------------------------------------------AATAAAGCTGTGGGAAATTACAGA 	1


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
12 Oryza sativa GSM520634-18667 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGAC
--------------------TTTCCACAGCTTTCTTGAACTT 	2
---------------------TTCCACAGCTTTCTTGAACTT 	240
---------------------TTCCACAGCTTTCTTGAACTTC 	1
---------------------TTCCACAGCTTTCTTGAACT 	2
---------------------TTCCACAGCTTTCTTGAAC 	1
---------------------------AGCTTTCTTGAACTTCTCTTGTG 	3
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAG 	2
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAGA 	3
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	3
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAGA 	1
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	1
-------------------------------------------------------------------------------------------------------------------------------AAGAAAGCTGTGGGAAGAAATGGC 	2
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAAT 	2
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGCA 	69
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGC 	2
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAA 	3


Overlaps with: MNEST042028 MNEST048947
Overlaps with miRBase pre-miRNAs: osa-MIR396c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
13 Oryza sativa GSM520634-18667 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	38
-------------------------------TTCCACAGCTTTCTTGAACT 	2
-------------------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
14 Oryza sativa GSM520636-18672 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACT 	3
---------------------TTCCACAGCTTTCTTGAAC 	2
---------------------TTCCACAGCTTTCTTGAACTG 	30


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
15 Oryza sativa GSM520636-18672 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGAC
--------------------TTTCCACAGCTTTCTTGAACTT 	5
--------------------TTTCCACAGCTTTCTTGAACT 	6
--------------------TTTCCACAGCTTTCTTGAACTTCT 	2
--------------------TTTCCACAGCTTTCTTGAAC 	1
---------------------TTCCACAGCTTTCTTGAACT 	3
---------------------TTCCACAGCTTTCTTGAAC 	2
---------------------TTCCACAGCTTTCTTGAACTT 	667
----------------------TCCACAGCTTTCTTGAACTT 	2
---------------------------AGCTTTCTTGAACTTCTCTTGTG 	3
----------------------------------------------------------------------------------------------------------------------AAGAGGGTCAAGAAAGCTGTGGGA 	1
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAGA 	12
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAG 	7
--------------------------------------------------------------------------------------------------------------------------GGGTCAAGAAAGCTGTGGGAAGA 	1
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAGA 	2
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	30
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	4
-------------------------------------------------------------------------------------------------------------------------------AAGAAAGCTGTGGGAAGAAATGGC 	1
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGCA 	8
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATG 	2


Overlaps with: MNEST042028 MNEST048947
Overlaps with miRBase pre-miRNAs: osa-MIR396c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
16 Oryza sativa GSM520636-18672 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACT 	3
-------------------------------TTCCACAGCTTTCTTGAAC 	2
-------------------------------TTCCACAGCTTTCTTGAACTG 	30


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
17 Oryza sativa GSM520637-18674 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACT 	277
---------------------TTCCACAGCTTTCTTGAAC 	19
---------------------TTCCACAGCTTTCTTGAACTG 	3


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
18 Oryza sativa GSM520637-18674 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACT 	277
-------------------------------TTCCACAGCTTTCTTGAAC 	19
-------------------------------TTCCACAGCTTTCTTGAACTG 	3


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
19 Oryza sativa GSM520637-18674 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGAC
--------------------TTTCCACAGCTTTCTTGAACTT 	16
--------------------TTTCCACAGCTTTCTTGAACT 	17
--------------------TTTCCACAGCTTTCTTGAAC 	2
---------------------TTCCACAGCTTTCTTGAACTTC 	2
---------------------TTCCACAGCTTTCTTGAACT 	277
---------------------TTCCACAGCTTTCTTGAAC 	19
---------------------TTCCACAGCTTTCTTGAACTTCT 	1
---------------------TTCCACAGCTTTCTTGAACTT 	2971
----------------------TCCACAGCTTTCTTGAACTT 	8
-----------------------CCACAGCTTTCTTGAACTT 	2
---------------------------AGCTTTCTTGAACTTCTCTTGTG 	4
------------------------------TTTCTTGAACTTCTCTTGTG 	4
-----------------------------------TGAACTTCTCTTGTGCCTCACTC 	1
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAGA 	4
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAG 	2
--------------------------------------------------------------------------------------------------------------------------GGGTCAAGAAAGCTGTGGGAAG 	1
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGA 	2
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	6
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAG 	3
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	25
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGCA 	4


Overlaps with: MNEST042028 MNEST048947
Overlaps with miRBase pre-miRNAs: osa-MIR396c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
20 Oryza sativa GSM693279 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
--------------TGTGGTCTTCCACAGCTTTCT 	1
---------------------TTCCACAGCTTTCTTGAACTG 	76
---------------------TTCCACAGCTTTCTTGAAC 	3
---------------------TTCCACAGCTTTCTTGAACTGCAT 	1
---------------------TTCCACAGCTTTCTTGAACTGC 	1
-------------------------------------------------------------------------------------------------AGTTCAATAAAGCTGTGGGAAA 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	34
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	6
----------------------------------------------------------------------------------------------------TCAATAAAGCTGTGGGAAA 	1
----------------------------------------------------------------------------------------------------------AAGCTGTGGGAAATTACAGAG 	3


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
21 Oryza sativa GSM693279 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	76
-------------------------------TTCCACAGCTTTCTTGAAC 	3
-------------------------------TTCCACAGCTTTCTTGAACTGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAATAAAGCTGTGGGAAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	34
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	6
----------------------------------------------------------------------------------------------------------------------------------------------------TCAATAAAGCTGTGGGAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAAATTGCAGAGAGAGACC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAAATTGCAGAGAGAGAC 	1


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
22 Oryza sativa GSM520639-18678 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
-------------------TCTTCCACAGCTTTCTTGAACT 	2
---------------------TTCCACAGCTTTCTTGAACT 	163
---------------------TTCCACAGCTTTCTTGAAC 	9
---------------------TTCCACAGCTTTCTTGAACTG 	38
----------------------TCCACAGCTTTCTTGAACTG 	2
----------------------TCCACAGCTTTCTTGAACTGC 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAA 	2
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	6
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	1
---------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAATTACAGA 	2


Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
23 Oryza sativa GSM520639-18678 TTCCACAGCTTTCTTGAACT TTCAATAAAGCTGTGGGAAA up 1 0


Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-----------------------------TCTTCCACAGCTTTCTTGAACT 	2
-------------------------------TTCCACAGCTTTCTTGAACT 	163
-------------------------------TTCCACAGCTTTCTTGAAC 	9
-------------------------------TTCCACAGCTTTCTTGAACTG 	38
--------------------------------TCCACAGCTTTCTTGAACTG 	2
--------------------------------TCCACAGCTTTCTTGAACTGC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAA 	2
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	6
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	1


Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
24 Oryza sativa GSM520639-18678 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTGCAAGAAGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATTACAAGGAC
--------------------TTTCCACAGCTTTCTTGAAC 	1
--------------------TTTCCACAGCTTTCTTGAACTT 	25
--------------------TTTCCACAGCTTTCTTGAACT 	34
---------------------TTCCACAGCTTTCTTGAACTTC 	3
---------------------TTCCACAGCTTTCTTGAACT 	163
---------------------TTCCACAGCTTTCTTGAAC 	9
---------------------TTCCACAGCTTTCTTGAACTT 	4898
----------------------TCCACAGCTTTCTTGAACTT 	3
-----------------------CCACAGCTTTCTTGAACTT 	5
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAGA 	18
-------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAAG 	3
---------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	17
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAG 	9
----------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	46
-----------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAG 	2
-----------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAGA 	1
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATG 	3
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGCA 	27
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAATGGC 	3
--------------------------------------------------------------------------------------------------------------------------------AGAAAGCTGTGGGAAGAAA 	2
----------------------------------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAGAAATGGCA 	4
-------------------------------------------------------------------------------------------------------------------------------------GCTGTGGGAAGAAATGGCA 	1


Overlaps with: MNEST042028 MNEST048947
Overlaps with miRBase pre-miRNAs: osa-MIR396c
HuntMi prediction: true miRNA