miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTG

selected species: Arabidopsis thaliana



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415785 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG up 1 0


Secondary structure

TCGTCTGCTCTACATGACCCTCTCTGTATTCTTCCACAGCTTTCTTGAACTGCAAAACTTCTTCAGATTTTTTTTTTTTTCTTTTGATATCTCTTACGCATAAAATAGTGATTTTCTTCATATCTCTGCTCGATTGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGAGTCAAATGATTTTCTAA
-------------------------------TTCCACAGCTTTCTTGAACTG 	71
-------------------------------TTCCACAGCTTTCTTGAACT 	1
-------------------------------TTCCACAGCTTTCTTGAAC 	60



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366866 TTCCACAGCTTTCTTGAACTGC GGTTCAATAAAGCTGTGGGAAG up 1 0


Secondary structure

TCGTCTGCTCTACATGACCCTCTCTGTATTCTTCCACAGCTTTCTTGAACTGCAAAACTTCTTCAGATTTTTTTTTTTTTCTTTTGATATCTCTTACGCATAAAATAGTGATTTTCTTCATATCTCTGCTCGATTGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGAGTCAAATGATTTTCTAA
------------------CCTCTCTGTATTCTTCCACAGC 	3
---------------------CTCTGTATTCTTCCACAGCTT 	6
---------------------------ATTCTTCCACAGCTTTCTTGA 	2
-----------------------------TCTTCCACAGCTTTCTTGAACTGC 	1
------------------------------CTTCCACAGCTTTCTTGAACTGC 	2
-------------------------------TTCCACAGCTTTCTTGAAC 	3
-------------------------------TTCCACAGCTTTCTTGAACTGC 	2113
-------------------------------TTCCACAGCTTTCTTGAACTG 	945
-------------------------------TTCCACAGCTTTCTTGAACT 	56
-------------------------------TTCCACAGCTTTCTTGAACTGCA 	6
-------------------------------TTCCACAGCTTTCTTGAACTGCAA 	12
--------------------------------TCCACAGCTTTCTTGAACT 	2
--------------------------------TCCACAGCTTTCTTGAACTGCA 	1
--------------------------------TCCACAGCTTTCTTGAACTGC 	83
--------------------------------TCCACAGCTTTCTTGAACTG 	1
---------------------------------CCACAGCTTTCTTGAACTGC 	24
---------------------------------CCACAGCTTTCTTGAACTGCA 	97
----------------------------------CACAGCTTTCTTGAACTGC 	20
----------------------------------CACAGCTTTCTTGAACTGCA 	1
---------------------------------------------------------------------------------------------------------------------TCATATCTCTGCTCGATTGATTTG 	1
----------------------------------------------------------------------------------------------------------------------CATATCTCTGCTCGATTGATTTGC 	2
-----------------------------------------------------------------------------------------------------------------------ATATCTCTGCTCGATTGATTTGC 	2
-----------------------------------------------------------------------------------------------------------------------ATATCTCTGCTCGATTGATTTGCG 	2
----------------------------------------------------------------------------------------------------------------------------------CGATTGATTTGCGGTTCAAT 	1
-------------------------------------------------------------------------------------------------------------------------------------------TGCGGTTCAATAAAGCTGTGGGA 	1
--------------------------------------------------------------------------------------------------------------------------------------------GCGGTTCAATAAAGCTGTGGGAAG 	3
--------------------------------------------------------------------------------------------------------------------------------------------GCGGTTCAATAAAGCTGTGGGAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------CGGTTCAATAAAGCTGTGGGA 	206
---------------------------------------------------------------------------------------------------------------------------------------------CGGTTCAATAAAGCTGTGGG 	3
----------------------------------------------------------------------------------------------------------------------------------------------GGTTCAATAAAGCTGTGGG 	2
----------------------------------------------------------------------------------------------------------------------------------------------GGTTCAATAAAGCTGTGGGAAG 	9
----------------------------------------------------------------------------------------------------------------------------------------------GGTTCAATAAAGCTGTGGGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAGA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAG 	58
-----------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAGA 	2
------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAG 	23
-------------------------------------------------------------------------------------------------------------------------------------------------TCAATAAAGCTGTGGGAAG 	3
----------------------------------------------------------------------------------------------------------------------------------------------------ATAAAGCTGTGGGAAGATACAG 	2
------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAGATACAGA 	2



HuntMi prediction: true miRNA