miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTG

selected species: Glycine max



10 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM852280 TTCCACAGCTTTCTTGAACTG ATTCAAGATAGCTGTGGAAAA up 2 0


Secondary structure

GGAATGGTCTTTTTCGTGATCTTCCACAGCTTTCTTGAACTGTGTTGTGAGGCTTCTCTCCAATGAAGGTTTATACCCTATGCAAAAGAAATTCTATGAGCACAATTCAAGATAGCTGTGGAAAATCACTGAGATGATCTGGT
---------------------TTCCACAGCTTTCTTGAACTG 	33
-----------------------------------------------------------------------------------------------------ACAATTCAAGATAGCTGTGGA 	3
--------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAAA 	14
--------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAA 	2


Overlaps with: MNEST040477
Overlaps with miRBase pre-miRNAs: gma-MIR396e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM852280 TTCCACAGCTTTCTTGAACTG ATTCAAGATAGCTGTGGAAAA up 2 0


Secondary structure

TGAATGGTCTTTTTCGTGATCTTCCACAGCTTTCTTGAACTGTGTTGTGTGAGGTTTCTCCAAGTGAAGGTTTAAGATCCCTTATGCAACATAAATTCTTTGAGCACAATTCAAGATAGCTGTGGAAAATCACTGAGATGATCTCGT
---------------------TTCCACAGCTTTCTTGAACTG 	33
---------------------------------------------------------------------------------------------------------ACAATTCAAGATAGCTGTGGA 	3
------------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAAA 	14
------------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM543394 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG up 1 0


Secondary structure

AGTCTTCAATATCATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATAGAGTTCCTTTGCATGCATGCCAAGGCACTCTTGCTCCCACACCTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACAACGAACT
-------------------------------TTCCACAGCTTTCTTGAACTG 	362
-------------------------------TTCCACAGCTTTCTTGAAC 	65
-------------------------------TTCCACAGCTTTCTTGAACT 	5
-----------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAG 	111
------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAG 	14



Overlaps with miRBase pre-miRNAs: gma-MIR396i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM543394 TTCCACAGCTTTCTTGAACTG ATTCAAGATAGCTGTGGAAAA up 2 0


Secondary structure

GGAATGGTCTTTTTCGTGATCTTCCACAGCTTTCTTGAACTGTGTTGTGAGGCTTCTCTCCAATGAAGGTTTATACCCTATGCAAAAGAAATTCTATGAGCACAATTCAAGATAGCTGTGGAAAATCACTGAGATGATCTGGT
---------------------TTCCACAGCTTTCTTGAACTG 	362
---------------------TTCCACAGCTTTCTTGAAC 	65
---------------------TTCCACAGCTTTCTTGAACT 	5
--------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAAA 	37


Overlaps with: MNEST040477
Overlaps with miRBase pre-miRNAs: gma-MIR396e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543394 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG up 1 0


Secondary structure

AGTCTTCAATATCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAATCTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACGGACTAGC
-------------------------------TTCCACAGCTTTCTTGAACTG 	362
-------------------------------TTCCACAGCTTTCTTGAAC 	65
-------------------------------TTCCACAGCTTTCTTGAACT 	5
-----------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAG 	111
------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAG 	14


Overlaps with: MNEST003462 MNEST003464
Overlaps with miRBase pre-miRNAs: gma-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543394 TTCCACAGCTTTCTTGAACTG ATTCAAGATAGCTGTGGAAAA up 2 0


Secondary structure

TGAATGGTCTTTTTCGTGATCTTCCACAGCTTTCTTGAACTGTGTTGTGTGAGGTTTCTCCAAGTGAAGGTTTAAGATCCCTTATGCAACATAAATTCTTTGAGCACAATTCAAGATAGCTGTGGAAAATCACTGAGATGATCTCGT
---------------------TTCCACAGCTTTCTTGAACTG 	362
---------------------TTCCACAGCTTTCTTGAAC 	65
---------------------TTCCACAGCTTTCTTGAACT 	5
------------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAAA 	37



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM543393 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG up 1 0


Secondary structure

AGTCTTCAATATCATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATAGAGTTCCTTTGCATGCATGCCAAGGCACTCTTGCTCCCACACCTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACAACGAACT
-------------------------------TTCCACAGCTTTCTTGAACTG 	432
-------------------------------TTCCACAGCTTTCTTGAAC 	30
---------------------------------CCACAGCTTTCTTGAACTGCA 	6
-----------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAG 	86
-----------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAA 	5
------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAG 	8



Overlaps with miRBase pre-miRNAs: gma-MIR396i
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM543393 TTCCACAGCTTTCTTGAACTG ATTCAAGATAGCTGTGGAAAA up 2 0


Secondary structure

GGAATGGTCTTTTTCGTGATCTTCCACAGCTTTCTTGAACTGTGTTGTGAGGCTTCTCTCCAATGAAGGTTTATACCCTATGCAAAAGAAATTCTATGAGCACAATTCAAGATAGCTGTGGAAAATCACTGAGATGATCTGGT
---------------------TTCCACAGCTTTCTTGAACTG 	432
---------------------TTCCACAGCTTTCTTGAAC 	30
--------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAAA 	35


Overlaps with: MNEST040477
Overlaps with miRBase pre-miRNAs: gma-MIR396e
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Glycine max GSM543393 TTCCACAGCTTTCTTGAACTG GTTCAATAAAGCTGTGGGAAG up 1 0


Secondary structure

AGTCTTCAATATCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAATCTTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACAACGGACTAGC
-------------------------------TTCCACAGCTTTCTTGAACTG 	432
-------------------------------TTCCACAGCTTTCTTGAAC 	30
---------------------------------CCACAGCTTTCTTGAACTGCA 	6
-----------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAG 	86
-----------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAA 	5
------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAG 	8


Overlaps with: MNEST003462 MNEST003464
Overlaps with miRBase pre-miRNAs: gma-MIR396a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
10 Glycine max GSM543393 TTCCACAGCTTTCTTGAACTG ATTCAAGATAGCTGTGGAAAA up 2 0


Secondary structure

TGAATGGTCTTTTTCGTGATCTTCCACAGCTTTCTTGAACTGTGTTGTGTGAGGTTTCTCCAAGTGAAGGTTTAAGATCCCTTATGCAACATAAATTCTTTGAGCACAATTCAAGATAGCTGTGGAAAATCACTGAGATGATCTCGT
---------------------TTCCACAGCTTTCTTGAACTG 	432
---------------------TTCCACAGCTTTCTTGAAC 	30
------------------------------------------------------------------------------------------------------------ATTCAAGATAGCTGTGGAAAA 	35



HuntMi prediction: true miRNA