miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTG

selected species: Oryza sativa

10 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Oryza sativa	GSM693280	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACTG 	45
---------------------TTCCACAGCTTTCTTGAAC 	6
---------------------TTCCACAGCTTTCTTGAACT 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	1
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	8

Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Oryza sativa	GSM693280	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	45
-------------------------------TTCCACAGCTTTCTTGAAC 	6
-------------------------------TTCCACAGCTTTCTTGAACT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	8
------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCTGTGGGAAATTGC 	9
-------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAGCTGTGGGAAATTGCA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAAATTGCAGAGAGAGACC 	12

Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Oryza sativa	GSM686040-31373	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACTG 	23
---------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	4
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	4

Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Oryza sativa	GSM686040-31373	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	23
-------------------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	4

Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Oryza sativa	GSM520634-18667	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACTG 	38
---------------------TTCCACAGCTTTCTTGAACT 	2
---------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1
------------------------------------------------------------------------------------------------------AATAAAGCTGTGGGAAATTACAGA 	1

Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Oryza sativa	GSM520634-18667	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	38
-------------------------------TTCCACAGCTTTCTTGAACT 	2
-------------------------------TTCCACAGCTTTCTTGAAC 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGA 	1

Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Oryza sativa	GSM520636-18672	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
---------------------TTCCACAGCTTTCTTGAACT 	3
---------------------TTCCACAGCTTTCTTGAAC 	2
---------------------TTCCACAGCTTTCTTGAACTG 	30

Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Oryza sativa	GSM520636-18672	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACT 	3
-------------------------------TTCCACAGCTTTCTTGAAC 	2
-------------------------------TTCCACAGCTTTCTTGAACTG 	30

Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Oryza sativa	GSM693279	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

AAGATGGTCCTCTTTGTGGTCTTCCACAGCTTTCTTGAACTGCATCTTTGAGAGAGATTAGCATCCCTATGTGTGGATTTTGCTTGCACGAGTGTGCAGTTCAATAAAGCTGTGGGAAATTACAGAGAGAGGTCAAT
--------------TGTGGTCTTCCACAGCTTTCT 	1
---------------------TTCCACAGCTTTCTTGAACTG 	76
---------------------TTCCACAGCTTTCTTGAAC 	3
---------------------TTCCACAGCTTTCTTGAACTGCAT 	1
---------------------TTCCACAGCTTTCTTGAACTGC 	1
-------------------------------------------------------------------------------------------------AGTTCAATAAAGCTGTGGGAAA 	1
--------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	34
---------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	6
----------------------------------------------------------------------------------------------------TCAATAAAGCTGTGGGAAA 	1
----------------------------------------------------------------------------------------------------------AAGCTGTGGGAAATTACAGAG 	3

Overlaps with: MNEST042027 MNEST048946
Overlaps with miRBase pre-miRNAs: osa-MIR396b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Oryza sativa	GSM693279	TTCCACAGCTTTCTTGAACTG	GTTCAATAAAGCTGTGGGAAA	up	1	0

Secondary structure

GTACTACATCGATCTGGCCCTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGTTAGACTCGATCGGTTGCATTGGCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAAATCTCGTCATC
-------------------------------TTCCACAGCTTTCTTGAACTG 	76
-------------------------------TTCCACAGCTTTCTTGAAC 	3
-------------------------------TTCCACAGCTTTCTTGAACTGC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------AGTTCAATAAAGCTGTGGGAAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------GTTCAATAAAGCTGTGGGAAA 	34
---------------------------------------------------------------------------------------------------------------------------------------------------TTCAATAAAGCTGTGGGAAA 	6
----------------------------------------------------------------------------------------------------------------------------------------------------TCAATAAAGCTGTGGGAAA 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAAATTGCAGAGAGAGACC 	3
----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGAAATTGCAGAGAGAGAC 	1

Overlaps with: MNEST042026 MNEST048945
Overlaps with miRBase pre-miRNAs: osa-MIR396a
HuntMi prediction: true miRNA