miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTG

selected species: Vitis vinifera



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 TTCCACAGCTTTCTTGAACTG GCTCAGGAAAGTTGTGGAACA up 1 0


Secondary structure

TAGATGATCCTTTCTGTGATCTTCCACAGCTTTCTTGAACTGTTTTGGAAGCCTTCCACTTCCATGCAATGGAGGAGTTCAACCAACAGCTCAGGAAAGTTGTGGAACATTACTGAGAGGGTCAGAT
---------------------TTCCACAGCTTTCTTGAACTG 	15
---------------------TTCCACAGCTTTCTTGAACT 	4
---------------------TTCCACAGCTTTCTTGAAC 	9
----------------------TCCACAGCTTTCTTGAACT 	1

Overlaps with: MNEST041662 MNEST054870
Overlaps with miRBase pre-miRNAs: vvi-MIR396c
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458928-2716 TTCCACAGCTTTCTTGAACTG GCTCAGGAAAGTTGTGGAACA up 1 0


Secondary structure

TAGATGATCCTTTCTGTGATCTTCCACAGCTTTCTTGAACTGTTTTGGAAGCCTTCCACTTCCATGCAATGGAGGAGTTCAACCAACAGCTCAGGAAAGTTGTGGAACATTACTGAGAGGGTCAGAT
---------------------TTCCACAGCTTTCTTGAACTG 	24
---------------------TTCCACAGCTTTCTTGAACT 	11
---------------------TTCCACAGCTTTCTTGAAC 	8
----------------------TCCACAGCTTTCTTGAACTGT 	1

Overlaps with: MNEST041662 MNEST054870
Overlaps with miRBase pre-miRNAs: vvi-MIR396c
HuntMi prediction: true miRNA