miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTT

selected species: Arabidopsis thaliana



7 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
---------------------TTCCACAGCTTTCTTGAACTTT 	1
---------------------TTCCACAGCTTTCTTGAACTT 	407
---------------------TTCCACAGCTTTCTTGAACT 	6
---------------------TTCCACAGCTTTCTTGAAC 	121
----------------------TCCACAGCTTTCTTGAACTT 	2
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	243
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAA 	1
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAAAA 	4
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAAA 	114
-----------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAA 	2



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415785 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
------------------CTTTTCCACAGCTTTCTTGAA 	1
---------------------TTCCACAGCTTTCTTGAACTTT 	5
---------------------TTCCACAGCTTTCTTGAACTT 	71
---------------------TTCCACAGCTTTCTTGAACT 	1
---------------------TTCCACAGCTTTCTTGAAC 	60
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	4
-----------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM366870 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
---------------------TTCCACAGCTTTCTTGAACTTT 	7
---------------------TTCCACAGCTTTCTTGAACT 	80
---------------------TTCCACAGCTTTCTTGAAC 	1
---------------------TTCCACAGCTTTCTTGAACTT 	1010
----------------------TCCACAGCTTTCTTGAACTT 	1
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	139
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAA 	4
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGA 	1
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAAA 	10
-----------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366869 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
---------------------TTCCACAGCTTTCTTGAACT 	33
---------------------TTCCACAGCTTTCTTGAACTT 	98
---------------------TTCCACAGCTTTCTTGAACTTTC 	1
----------------------TCCACAGCTTTCTTGAACT 	1
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAA 	1
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	78
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAAA 	2
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAA 	1



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366866 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
---------------------TTCCACAGCTTTCTTGAACTTT 	8
---------------------TTCCACAGCTTTCTTGAAC 	3
---------------------TTCCACAGCTTTCTTGAACT 	56
---------------------TTCCACAGCTTTCTTGAACTT 	1108
----------------------TCCACAGCTTTCTTGAACT 	2
----------------------TCCACAGCTTTCTTGAACTT 	1
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	95
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAAA 	30



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM304285 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
---------------------TTCCACAGCTTTCTTGAACTT 	21
---------------------TTCCACAGCTTTCTTGAACT 	10
---------------------TTCCACAGCTTTCTTGAAC 	1
----------------------TCCACAGCTTTCTTGAACT 	1
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	18
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAA 	3



HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAAA up 1 0


Secondary structure

ATGAAGATCCTGGTCATACTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTCTTAAACAAAAGTAAGAAGAAAAAAAACTTTAAGATTAAGCATTTTGGAAGCTCAAGAAAGCTGTGGGAAAACATGACAATTCAGGGTT
---------------------TTCCACAGCTTTCTTGAACTTT 	27
---------------------TTCCACAGCTTTCTTGAAC 	5
---------------------TTCCACAGCTTTCTTGAACTT 	2389
---------------------TTCCACAGCTTTCTTGAACT 	190
-----------------------CCACAGCTTTCTTGAACTT 	1
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGA 	3
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAA 	3
---------------------------------------------------------------------------------------------------------------------GCTCAAGAAAGCTGTGGGAAA 	166
----------------------------------------------------------------------------------------------------------------------CTCAAGAAAGCTGTGGGAAA 	8



HuntMi prediction: true miRNA