miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTT

selected species: Brachypodium distachyon



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Brachypodium distachyon GSM506620-12051 TTCCACAGCTTTCTTGAACTT GGTCAAGAAAGCTGTGGGAAG up 1 0


Secondary structure

CTCGAGCAAGTAGTTAGTCCATGCCATTCCTTTCCACAGCTTTCTTGAACTTCCCTTCCCGGACTGCGGCCTGTAGCTCTCTCGCCCTCTTGATCTCCCGTCGATCTCCACTGGTAGCAGCTGGGAGAGCAGGGAAGAGGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATAACCAGGACTTTGATTGAA
---------------------------TCCTTTCCACAGCTTTCTTGA 	8
----------------------------CCTTTCCACAGCTTTCTTGAA 	7
------------------------------TTTCCACAGCTTTCTTGAACTT 	8
------------------------------TTTCCACAGCTTTCTTGAACT 	140
------------------------------TTTCCACAGCTTTCTTGAAC 	10
------------------------------TTTCCACAGCTTTCTTGAA 	4
-------------------------------TTCCACAGCTTTCTTGAACTTCC 	1
-------------------------------TTCCACAGCTTTCTTGAACTTC 	4
-------------------------------TTCCACAGCTTTCTTGAACTT 	1147
-------------------------------TTCCACAGCTTTCTTGAACT 	80
-------------------------------TTCCACAGCTTTCTTGAAC 	3
--------------------------------TCCACAGCTTTCTTGAACTTCC 	9
--------------------------------TCCACAGCTTTCTTGAACTTC 	4
--------------------------------TCCACAGCTTTCTTGAACTT 	5
---------------------------------CCACAGCTTTCTTGAACTT 	2
-----------------------------------ACAGCTTTCTTGAACTTCCCT 	1
------------------------------------CAGCTTTCTTGAACTTCCCT 	2
-------------------------------------AGCTTTCTTGAACTTCCCTTC 	3
-------------------------------------AGCTTTCTTGAACTTCCCTT 	1
-------------------------------------AGCTTTCTTGAACTTCCCT 	1
--------------------------------------------------------------------------------------------------------------------------------------AAGAGGAGGGTCAAGAAAGCTG 	1
---------------------------------------------------------------------------------------------------------------------------------------AGAGGAGGGTCAAGAAAGCTGT 	1
--------------------------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGAA 	1
--------------------------------------------------------------------------------------------------------------------------------------------AGGGTCAAGAAAGCTGTGGGA 	1
----------------------------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAAG 	47
----------------------------------------------------------------------------------------------------------------------------------------------GGTCAAGAAAGCTGTGGGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAGA 	45
-----------------------------------------------------------------------------------------------------------------------------------------------GTCAAGAAAGCTGTGGGAAG 	1
------------------------------------------------------------------------------------------------------------------------------------------------TCAAGAAAGCTGTGGGAAGA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAGAAATGGCA 	3
-----------------------------------------------------------------------------------------------------------------------------------------------------AAAGCTGTGGGAAGAAATGGC 	16
------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTGTGGGAAGAAATGGCA 	4


Overlaps with: MNEST041795
Overlaps with miRBase pre-miRNAs: bdi-MIR396e
HuntMi prediction: true miRNA