miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCACAGCTTTCTTGAACTT

selected species: Glycine max



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Glycine max GSM543396 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

TCAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAGTGCAATTATTGATGTGGCATAGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGAC
---------------------TTCCACAGCTTTCTTGAACTT 	114
---------------------TTCCACAGCTTTCTTGAAC 	38


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Glycine max GSM543396 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

CATGCTTGCTTGAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAATGCAGCTATTGATGTGGCATTGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGACTTAATTGGTT
-------------------------------TTCCACAGCTTTCTTGAACTT 	114
-------------------------------TTCCACAGCTTTCTTGAAC 	38


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Glycine max GSM852280 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

TCAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAGTGCAATTATTGATGTGGCATAGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGAC
---------------------TTCCACAGCTTTCTTGAACTT 	31
---------------------TTCCACAGCTTTCTTGAACTTC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Glycine max GSM852280 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

CATGCTTGCTTGAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAATGCAGCTATTGATGTGGCATTGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGACTTAATTGGTT
-------------------------------TTCCACAGCTTTCTTGAACTT 	31
-------------------------------TTCCACAGCTTTCTTGAACTTC 	1


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Glycine max GSM543393 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

TCAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAGTGCAATTATTGATGTGGCATAGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGAC
---------------------TTCCACAGCTTTCTTGAACTT 	54
---------------------TTCCACAGCTTTCTTGAAC 	30


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Glycine max GSM543393 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

CATGCTTGCTTGAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAATGCAGCTATTGATGTGGCATTGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGACTTAATTGGTT
-------------------------------TTCCACAGCTTTCTTGAACTT 	54
-------------------------------TTCCACAGCTTTCTTGAAC 	30


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Glycine max GSM543395 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

TCAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAGTGCAATTATTGATGTGGCATAGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGAC
---------------------TTCCACAGCTTTCTTGAACTT 	29


HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Glycine max GSM543395 TTCCACAGCTTTCTTGAACTT GTTTAAGAAAAATGTGGAAAA up 2 0


Secondary structure

CATGCTTGCTTGAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAATGCAGCTATTGATGTGGCATTGAAGTTTAAGAAAAATGTGGAAAAACATGTCAAATCTAGGACTTAATTGGTT
-------------------------------TTCCACAGCTTTCTTGAACTT 	29


HuntMi prediction: true miRNA