miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCATCTCTTGCACACTGGA

selected species: Vitis vinifera



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Vitis vinifera GSM458930-2718 TTCCATCTCTTGCACACTGGA TGGTGTGCACGGGATGGAATA up 1 0


Secondary structure

CTTGTGATGTATTCCATCTCTTGCACACTGGACCAGCGCTCCAGCTGCAGTTTGGTGTGCACGGGATGGAATACATCATGG
-----------TTCCATCTCTTGCACACTGGACCA 	1
-----------TTCCATCTCTTGCACACTGGAC 	2
-----------TTCCATCTCTTGCACACTGGA 	400
-----------TTCCATCTCTTGCACACTGG 	16
------------TCCATCTCTTGCACACTGGA 	2
----------------------------------------------------TGGTGTGCACGGGATGGAATA 	5
----------------------------------------------------TGGTGTGCACGGGATGGAA 	2
-----------------------------------------------------GGTGTGCACGGGATGGAATA 	1


Overlaps with: MNEST041699
Overlaps with miRBase pre-miRNAs: vvi-MIR2950
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Vitis vinifera GSM458929-2717 TTCCATCTCTTGCACACTGGA TGGTGTGCACGGGATGGAATA up 1 0


Secondary structure

CTTGTGATGTATTCCATCTCTTGCACACTGGACCAGCGCTCCAGCTGCAGTTTGGTGTGCACGGGATGGAATACATCATGG
----------ATTCCATCTCTTGCACACTGGA 	4
----------ATTCCATCTCTTGCACACTGG 	5
-----------TTCCATCTCTTGCACACTGGACCA 	2
-----------TTCCATCTCTTGCACACTGGAC 	11
-----------TTCCATCTCTTGCACACTGGA 	2662
-----------TTCCATCTCTTGCACACTGG 	102
-----------TTCCATCTCTTGCACACTG 	1
------------TCCATCTCTTGCACACTGGA 	4
-------------CCATCTCTTGCACACTGGA 	1
-------------------------------------------------GTTTGGTGTGCACGGGATGGAATA 	1
--------------------------------------------------TTTGGTGTGCACGGGATGGAATAC 	1
---------------------------------------------------TTGGTGTGCACGGGATGGAA 	1
----------------------------------------------------TGGTGTGCACGGGATGGAATAC 	3
----------------------------------------------------TGGTGTGCACGGGATGGAATA 	95
----------------------------------------------------TGGTGTGCACGGGATGGAAT 	4
-----------------------------------------------------GGTGTGCACGGGATGGAATAC 	21
-----------------------------------------------------GGTGTGCACGGGATGGAATA 	9
-----------------------------------------------------GGTGTGCACGGGATGGAAT 	1
------------------------------------------------------GTGTGCACGGGATGGAATA 	1


Overlaps with: MNEST041699
Overlaps with miRBase pre-miRNAs: vvi-MIR2950
HuntMi prediction: true miRNA