miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCCTATGCATATACTTCTTT

selected species: Mus musculus



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Mus musculus GSM527274-2107 TTCCTATGCATATACTTCTTT AGAGGTATAGCGCATGGGAAGA up 1 1


Secondary structure

ATTCTCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTC
--------------------TTTCCTATGCATATACTTCTT 	1
---------------------TTCCTATGCATATACTTCT 	1
---------------------TTCCTATGCATATACTTCTTT 	17

Overlaps with: MNEST031927 MNEST031928
Overlaps with miRBase pre-miRNAs: mmu-mir-202
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Mus musculus GSM527280 TTCCTATGCATATACTTCTTT AGAGGTATAGCGCATGGGAAGA up 1 1


Secondary structure

ATTCTCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTC
---------------------TTCCTATGCATATACTTCTTT 	7

Overlaps with: MNEST031927 MNEST031928
Overlaps with miRBase pre-miRNAs: mmu-mir-202
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Mus musculus GSM527276 TTCCTATGCATATACTTCTTT AGAGGTATAGCGCATGGGAAGA up 1 1


Secondary structure

ATTCTCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTC
--------------------TTTCCTATGCATATACTTCTTT 	1
---------------------TTCCTATGCATATACTTCTTT 	32
---------------------TTCCTATGCATATACTTCTT 	1

Overlaps with: MNEST031927 MNEST031928
Overlaps with miRBase pre-miRNAs: mmu-mir-202
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Mus musculus GSM527277-2110 TTCCTATGCATATACTTCTTT AGAGGTATAGCGCATGGGAAGA up 1 1


Secondary structure

ATTCTCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTC
--------------------TTTCCTATGCATATACTTCTTT 	3
--------------------TTTCCTATGCATATACTTCTT 	1
---------------------TTCCTATGCATATACTTCT 	1
---------------------TTCCTATGCATATACTTCTT 	4
---------------------TTCCTATGCATATACTTCTTT 	66
---------------------------------------------------------AGAGGTATAGCGCATGGGAAG 	1

Overlaps with: MNEST031927 MNEST031928
Overlaps with miRBase pre-miRNAs: mmu-mir-202
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Mus musculus GSM539873 TTCCTATGCATATACTTCTTT AGAGGTATAGCGCATGGGAAGA up 1 1


Secondary structure

ATTCTCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTC
---------------------TTCCTATGCATATACTTCTTT 	8
---------------------------------------------------------AGAGGTATAGCGCATGGGAAGA 	2

Overlaps with: MNEST031927 MNEST031928
Overlaps with miRBase pre-miRNAs: mmu-mir-202
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Mus musculus GSM527279-2112 TTCCTATGCATATACTTCTTT AGAGGTATAGCGCATGGGAAGA up 1 1


Secondary structure

ATTCTCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTC
---------------------TTCCTATGCATATACTTCTTT 	19
---------------------TTCCTATGCATATACTTCTT 	2

Overlaps with: MNEST031927 MNEST031928
Overlaps with miRBase pre-miRNAs: mmu-mir-202
HuntMi prediction: true miRNA