miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCGAGGCCTATTAAACCTCTG

selected species: Arabidopsis thaliana



1 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM277608 TTCGAGGCCTATTAAACCTCTG GGGGTTTATAGACCTCGAATC up 1 1


Secondary structure

TATTTTCATGATTCGAGGCCTATTAAACCTCTGTTACATCTGCTTTTTGAAAAGTTGTCATTTTTCTGAAATCTTCTTGCCTCAATTTCCAACAGCAGATTCATCTTTCATTGGATGATCCGTTAGTTTTTGATAGAAAAAATGAGGTGGGAAGAAATTAAGACTGACTTCGAAATAGCCTTTAAAATAGGGGTTTATAGACCTCGAATCATATCAAA
----------ATTCGAGGCCTATTAAACCTC 	1
-----------TTCGAGGCCTATTAAACCTC 	1
-----------TTCGAGGCCTATTAAACCT 	1
-----------TTCGAGGCCTATTAAACCTCTG 	16
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGTTTATAGACCTCGAATC 	2

Overlaps with: MNEST040100 MNEST047023
Overlaps with miRBase pre-miRNAs: ath-MIR402
HuntMi prediction: true miRNA