miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

miRNEST 2.0: an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTCGATGTCTAGCAGTGCCA

selected species: Arabidopsis thaliana

12 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Arabidopsis thaliana	GSM304282	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------TTGCACTACGTGACATTGA 	1
--------------------TGCACTACGTGACATTGAAAC 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	13
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	15
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	2
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	76
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCC 	1

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Arabidopsis thaliana	GSM415786-5994	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------TTGCACTACGTGACATTGAA 	1
---------------------GCACTACGTGACATTGAAACTG 	1
---------------------GCACTACGTGACATTGAAAC 	6
-----------------------------------------------------------------------------------------TTTGTTCAAAGACATTTTCGATG 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAAT 	2
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	156
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	27
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	14
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGC 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTG 	1
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCAA 	8
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCA 	3
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	21
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	110
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	230
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCC 	3
----------------------------------------------------------------------------------------------------------TCGATGTCTAGCAGTGCCAA 	1

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Arabidopsis thaliana	GSM424847-4989	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	5
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	9

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Arabidopsis thaliana	GSM415785	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	38
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	10
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	13
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGC 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	20
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	18
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	72
----------------------------------------------------------------------------------------------------------TCGATGTCTAGCAGTGCCAAT 	1
----------------------------------------------------------------------------------------------------------TCGATGTCTAGCAGTGCCA 	2

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Arabidopsis thaliana	GSM366870	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------TTGCACTACGTGACATTGAAACTG 	1
-------------------TTGCACTACGTGACATTGAA 	2
---------------------GCACTACGTGACATTGAAAC 	4
---------------------GCACTACGTGACATTGAAACT 	2
--------------------------------------AACTGTCTTTCAACATTCCAA 	2
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	13
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	4
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCAA 	1
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCA 	2
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	6
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	101

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Arabidopsis thaliana	GSM304284	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
---------------------GCACTACGTGACATTGAAACT 	2
------------------------------------------------------------------------------------TTTGGTTTGTTCAAAGACATTTTC 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	2
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	7
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	16

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Arabidopsis thaliana	GSM366866	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------TTGCACTACGTGACATTGAA 	1
--------------------TGCACTACGTGACATTGAAACT 	2
---------------------GCACTACGTGACATTGAAAC 	2
------------------------------------------------------------------------------------TTTGGTTTGTTCAAAGACATTTTC 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	24
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	60
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	6
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCA 	3
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCAA 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCC 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	142
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	8
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	3

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Arabidopsis thaliana	GSM424848-4990	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	5
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	11
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	27

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Arabidopsis thaliana	GSM304283	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
--ATAAGAGGATTTAAACGTTGC 	1
---------------------GCACTACGTGACATTGAAACT 	1
-----------------------------TGACATTGAAACTGTCTTTCA 	1
--------------------------------------AACTGTCTTTCAACATTCCAA 	4
--------------------------------------AACTGTCTTTCAACATTCCA 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	4
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	4
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGC 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	11

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
10	Arabidopsis thaliana	GSM304285	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	6

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
11	Arabidopsis thaliana	GSM518432-13544	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
-------------------TTGCACTACGTGACATTGAA 	2
---------------------GCACTACGTGACATTGAAACT 	1
---------------------GCACTACGTGACATTGAAA 	1
---------------------GCACTACGTGACATTGAAACTG 	3
---------------------GCACTACGTGACATTGAAAC 	5
------------------------------------------------------------------------------------TTTGGTTTGTTCAAAGACATTTT 	1
------------------------------------------------------------------------------------TTTGGTTTGTTCAAAGACATTTTC 	3
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	79
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCA 	137
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	15
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCA 	7
--------------------------------------------------------------------------------------------------------TTTCGATGTCTAGCAGTGCCAA 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	8
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCC 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	362
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	1

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
12	Arabidopsis thaliana	GSM277608	TTCGATGTCTAGCAGTGCCA	CACTACGTGACATTGAAAC	down	4	1

Secondary structure

GAATAAGAGGATTTAAACGTTGCACTACGTGACATTGAAACTGTCTTTCAACATTCCAATATTTCAACTTTCGAATACCCAATATTTGGTTTGTTCAAAGACATTTTCGATGTCTAGCAGTGCCAATGTTTAAAATCAACTGAT
---------------------GCACTACGTGACATTGAAACTG 	7
---------------------GCACTACGTGACATTGAAAC 	4
---------------------------CGTGACATTGAAACTGTCTT 	1
---------------------------------------------------------------------------------ATATTTGGTTTGTTCAAAGACATT 	2
------------------------------------------------------------------------------------TTTGGTTTGTTCAAAGACATT 	1
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAA 	41
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCC 	10
-------------------------------------------------------------------------------------------------------TTTTCGATGTCTAGCAGTGCCAAT 	1
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAAT 	9
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCA 	90
---------------------------------------------------------------------------------------------------------TTCGATGTCTAGCAGTGCCAA 	31

Overlaps with: MNEST040129 MNEST047048
Overlaps with miRBase pre-miRNAs: ath-MIR775
HuntMi prediction: true miRNA