miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCGCTTGCAGAGAGAAATCAC

selected species: Arabidopsis thaliana



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415786-5994 TTCGCTTGCAGAGAGAAATCAC GATTCTCTGTGTAAGCGAAAG up 1 1


Secondary structure

CTGTGTTGGTGATTAAGTACTTTCGCTTGCAGAGAGAAATCACAGTGGTCAAAAAAGTTGTAGTTTTCTTAAAGTCTCTTTCCTCTGTGATTCTCTGTGTAAGCGAAAGAGCTTGCTCCCTAAACTT
-----------------TACTTTCGCTTGCAGAGAGAA 	1
---------------------TTCGCTTGCAGAGAGAAATCACAGT 	1
---------------------TTCGCTTGCAGAGAGAAATCACAG 	1
---------------------TTCGCTTGCAGAGAGAAATCACA 	17
---------------------TTCGCTTGCAGAGAGAAATCAC 	5941
---------------------TTCGCTTGCAGAGAGAAATCA 	200
---------------------TTCGCTTGCAGAGAGAAATC 	28
---------------------TTCGCTTGCAGAGAGAAAT 	38
----------------------TCGCTTGCAGAGAGAAATCACA 	24
----------------------TCGCTTGCAGAGAGAAATCAC 	12
-----------------------CGCTTGCAGAGAGAAATCAC 	1
------------------------GCTTGCAGAGAGAAATCACAG 	20
------------------------GCTTGCAGAGAGAAATCACA 	1
------------------------GCTTGCAGAGAGAAATCAC 	52
-------------------------CTTGCAGAGAGAAATCACAGT 	1
--------------------------TTGCAGAGAGAAATCACAGTGGT 	1
--------------------------TTGCAGAGAGAAATCACAGTGG 	8
-----------------------------------------------------------------------------------TCTGTGATTCTCTGTGTAAGC 	24
-----------------------------------------------------------------------------------TCTGTGATTCTCTGTGTAAG 	4
---------------------------------------------------------------------------------------TGATTCTCTGTGTAAGCGAAAG 	1
---------------------------------------------------------------------------------------TGATTCTCTGTGTAAGCGAAA 	9
----------------------------------------------------------------------------------------GATTCTCTGTGTAAGCGAAAG 	7
-----------------------------------------------------------------------------------------ATTCTCTGTGTAAGCGAAAG 	1


Overlaps with: MNEST040068 MNEST046990
Overlaps with miRBase pre-miRNAs: ath-MIR173
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM424847-4989 TTCGCTTGCAGAGAGAAATCAC GATTCTCTGTGTAAGCGAAAG up 1 1


Secondary structure

CTGTGTTGGTGATTAAGTACTTTCGCTTGCAGAGAGAAATCACAGTGGTCAAAAAAGTTGTAGTTTTCTTAAAGTCTCTTTCCTCTGTGATTCTCTGTGTAAGCGAAAGAGCTTGCTCCCTAAACTT
---------------------TTCGCTTGCAGAGAGAAATCACA 	2
---------------------TTCGCTTGCAGAGAGAAATCAC 	213
---------------------TTCGCTTGCAGAGAGAAATCA 	4
----------------------TCGCTTGCAGAGAGAAATCACA 	1
------------------------GCTTGCAGAGAGAAATCAC 	2
-----------------------------------------------------------------------------------TCTGTGATTCTCTGTGTAAGC 	1


Overlaps with: MNEST040068 MNEST046990
Overlaps with miRBase pre-miRNAs: ath-MIR173
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415785 TTCGCTTGCAGAGAGAAATCAC GATTCTCTGTGTAAGCGAAAG up 1 1


Secondary structure

CTGTGTTGGTGATTAAGTACTTTCGCTTGCAGAGAGAAATCACAGTGGTCAAAAAAGTTGTAGTTTTCTTAAAGTCTCTTTCCTCTGTGATTCTCTGTGTAAGCGAAAGAGCTTGCTCCCTAAACTT
---------------------TTCGCTTGCAGAGAGAAATCACA 	5
---------------------TTCGCTTGCAGAGAGAAATCAC 	9444
---------------------TTCGCTTGCAGAGAGAAATCA 	103
---------------------TTCGCTTGCAGAGAGAAATC 	31
---------------------TTCGCTTGCAGAGAGAAAT 	2
----------------------TCGCTTGCAGAGAGAAATCACA 	5
----------------------TCGCTTGCAGAGAGAAATCAC 	14
----------------------TCGCTTGCAGAGAGAAATCA 	1
----------------------TCGCTTGCAGAGAGAAATC 	1
-----------------------CGCTTGCAGAGAGAAATCAC 	1
------------------------GCTTGCAGAGAGAAATCACAG 	1
------------------------GCTTGCAGAGAGAAATCAC 	14
-----------------------------------------------------------------------------------TCTGTGATTCTCTGTGTAAGC 	6
---------------------------------------------------------------------------------------TGATTCTCTGTGTAAGCGAAA 	5


Overlaps with: MNEST040068 MNEST046990
Overlaps with miRBase pre-miRNAs: ath-MIR173
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM424848-4990 TTCGCTTGCAGAGAGAAATCAC GATTCTCTGTGTAAGCGAAAG up 1 1


Secondary structure

CTGTGTTGGTGATTAAGTACTTTCGCTTGCAGAGAGAAATCACAGTGGTCAAAAAAGTTGTAGTTTTCTTAAAGTCTCTTTCCTCTGTGATTCTCTGTGTAAGCGAAAGAGCTTGCTCCCTAAACTT
---------------------TTCGCTTGCAGAGAGAAATCAC 	375
---------------------TTCGCTTGCAGAGAGAAATCA 	8
---------------------TTCGCTTGCAGAGAGAAATC 	1
----------------------TCGCTTGCAGAGAGAAATCAC 	2
------------------------GCTTGCAGAGAGAAATCAC 	3
-----------------------------------------------------------------------------------TCTGTGATTCTCTGTGTAAG 	1
---------------------------------------------------------------------------------------TGATTCTCTGTGTAAGCGAAA 	1
----------------------------------------------------------------------------------------GATTCTCTGTGTAAGCGAAAG 	1


Overlaps with: MNEST040068 MNEST046990
Overlaps with miRBase pre-miRNAs: ath-MIR173
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM277608 TTCGCTTGCAGAGAGAAATCAC GATTCTCTGTGTAAGCGAAAG up 1 1


Secondary structure

CTGTGTTGGTGATTAAGTACTTTCGCTTGCAGAGAGAAATCACAGTGGTCAAAAAAGTTGTAGTTTTCTTAAAGTCTCTTTCCTCTGTGATTCTCTGTGTAAGCGAAAGAGCTTGCTCCCTAAACTT
---------------------TTCGCTTGCAGAGAGAAATCACA 	1
---------------------TTCGCTTGCAGAGAGAAAT 	1
---------------------TTCGCTTGCAGAGAGAAATCA 	23
---------------------TTCGCTTGCAGAGAGAAATCAC 	689
----------------------TCGCTTGCAGAGAGAAATCAC 	9
----------------------TCGCTTGCAGAGAGAAATCACA 	1
-----------------------CGCTTGCAGAGAGAAATCAC 	1
------------------------GCTTGCAGAGAGAAATCAC 	18
--------------------------TTGCAGAGAGAAATCACAGTGG 	2
--------------------------TTGCAGAGAGAAATCACAGTG 	1
-----------------------------------------------------------------------------------TCTGTGATTCTCTGTGTAAGC 	5
-------------------------------------------------------------------------------------TGTGATTCTCTGTGTAAGCG 	1
--------------------------------------------------------------------------------------GTGATTCTCTGTGTAAGCGA 	2
---------------------------------------------------------------------------------------TGATTCTCTGTGTAAGCGAA 	1
---------------------------------------------------------------------------------------TGATTCTCTGTGTAAGCGAAAG 	1
----------------------------------------------------------------------------------------GATTCTCTGTGTAAGCGAAAG 	30


Overlaps with: MNEST040068 MNEST046990
Overlaps with miRBase pre-miRNAs: ath-MIR173
HuntMi prediction: true miRNA