miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCGTTGTTGATGAAGCCTTGA

selected species: Caenorhabditis elegans



6 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Caenorhabditis elegans GSM427344-5691 TTCGTTGTTGATGAAGCCTTGA TGGGCTTCACAATAGTCGAATA down 1 2


Secondary structure

AGATAAAATTTCAGCTCCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAAATTTGGATATTCGTTGTTGATGAAGCCTTGATGGGGGTGAGAAAGAAGTT
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGA 	87
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTG 	1

Overlaps with: MNEST038312
Overlaps with miRBase pre-miRNAs: cel-mir-76
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Caenorhabditis elegans GSM427332-5684 TTCGTTGTTGATGAAGCCTTGA TGGGCTTCACAATAGTCGAATA down 1 2


Secondary structure

AGATAAAATTTCAGCTCCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAAATTTGGATATTCGTTGTTGATGAAGCCTTGATGGGGGTGAGAAAGAAGTT
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGA 	42
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTT 	1

Overlaps with: MNEST038312
Overlaps with miRBase pre-miRNAs: cel-mir-76
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Caenorhabditis elegans GSM427346-5695 TTCGTTGTTGATGAAGCCTTGA TGGGCTTCACAATAGTCGAATA down 1 2


Secondary structure

AGATAAAATTTCAGCTCCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAAATTTGGATATTCGTTGTTGATGAAGCCTTGATGGGGGTGAGAAAGAAGTT
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGA 	67
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCT 	2
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGAT 	1
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTT 	1

Overlaps with: MNEST038312
Overlaps with miRBase pre-miRNAs: cel-mir-76
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Caenorhabditis elegans GSM427345-5693 TTCGTTGTTGATGAAGCCTTGA TGGGCTTCACAATAGTCGAATA down 1 2


Secondary structure

AGATAAAATTTCAGCTCCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAAATTTGGATATTCGTTGTTGATGAAGCCTTGATGGGGGTGAGAAAGAAGTT
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGA 	8

Overlaps with: MNEST038312
Overlaps with miRBase pre-miRNAs: cel-mir-76
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Caenorhabditis elegans GSM297751-9445 TTCGTTGTTGATGAAGCCTTGA TGGGCTTCACAATAGTCGAATA down 1 2


Secondary structure

AGATAAAATTTCAGCTCCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAAATTTGGATATTCGTTGTTGATGAAGCCTTGATGGGGGTGAGAAAGAAGTT
----------------------TGGGCTTCACAATAGTCGAATA 	3
------------------------------------------------------------------ATTCGTTGTTGATGAAGCCTTG 	2
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTG 	22
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCT 	1
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGAT 	1
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGA 	1331
---------------------------------------------------------------------CGTTGTTGATGAAGCCTTGA 	17
---------------------------------------------------------------------CGTTGTTGATGAAGCCTTG 	1
----------------------------------------------------------------------GTTGTTGATGAAGCCTTGA 	52

Overlaps with: MNEST038312
Overlaps with miRBase pre-miRNAs: cel-mir-76
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Caenorhabditis elegans GSM297752-9446 TTCGTTGTTGATGAAGCCTTGA TGGGCTTCACAATAGTCGAATA down 1 2


Secondary structure

AGATAAAATTTCAGCTCCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAAATTTGGATATTCGTTGTTGATGAAGCCTTGATGGGGGTGAGAAAGAAGTT
----------------------TGGGCTTCACAATAGTCGAATA 	1
-----------------------------------------------------------------TATTCGTTGTTGATGAAGCCTTGA 	4
------------------------------------------------------------------ATTCGTTGTTGATGAAGCCTTGA 	1
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCT 	1
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGAT 	6
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTGA 	943
-------------------------------------------------------------------TTCGTTGTTGATGAAGCCTTG 	5
--------------------------------------------------------------------TCGTTGTTGATGAAGCCTTGA 	2
---------------------------------------------------------------------CGTTGTTGATGAAGCCTTGA 	1
----------------------------------------------------------------------GTTGTTGATGAAGCCTTGA 	38

Overlaps with: MNEST038312
Overlaps with miRBase pre-miRNAs: cel-mir-76
HuntMi prediction: true miRNA