miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTCGTTTTCTGGCAATCAAAAG

selected species: Drosophila melanogaster



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Drosophila melanogaster GSM399107-16288 TTCGTTTTCTGGCAATCAAAAG TTTGATCACCAGTAACTGAGAT down 6 0


Secondary structure

AATAGAATCCGTAGTGAGCTCGTTATCAAGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTGTTTCTGATACGGTTTCGTTTTCTGGCAATCAAAAGAACTTGGACTCGACTTGAATTCAACTACTTCGATGGGGC
------------------------------------------TTTGATCACCAGTAACTGAGAT 	30
------------------------------------------TTTGATCACCAGTAACTGAGA 	8
------------------------------------------TTTGATCACCAGTAACTGAG 	1
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAAA 	9
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAAAGA 	1
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAA 	9
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAA 	4
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAAAG 	39


Overlaps with: MNEST036497 MNEST036498
Overlaps with miRBase pre-miRNAs: dme-mir-961
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Drosophila melanogaster GSM399105-16286 TTCGTTTTCTGGCAATCAAAAG TTTGATCACCAGTAACTGAGAT down 6 0


Secondary structure

AATAGAATCCGTAGTGAGCTCGTTATCAAGGGCCGAGTTACCTTTGATCACCAGTAACTGAGATTGTTTCTGATACGGTTTCGTTTTCTGGCAATCAAAAGAACTTGGACTCGACTTGAATTCAACTACTTCGATGGGGC
------------------------------------------TTTGATCACCAGTAACTGAGAT 	22
------------------------------------------TTTGATCACCAGTAACTGAGA 	1
-------------------------------------------TTGATCACCAGTAACTGAGA 	1
--------------------------------------------TGATCACCAGTAACTGAGATTGT 	2
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAAA 	6
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAA 	3
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAA 	2
-------------------------------------------------------------------------------TTCGTTTTCTGGCAATCAAAAG 	25
--------------------------------------------------------------------------------TCGTTTTCTGGCAATCAAAAGA 	1
--------------------------------------------------------------------------------TCGTTTTCTGGCAATCAAAAG 	1


Overlaps with: MNEST036497 MNEST036498
Overlaps with miRBase pre-miRNAs: dme-mir-961
HuntMi prediction: true miRNA