miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCTCAAGAAGGTGCATGAAC

selected species: Arabidopsis thaliana



8 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM304282 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	9

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM415786-5994 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
----------------------TCAAGCACCAGCTCGAAGAAGC 	7
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAACA 	4
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	182
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAA 	1
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAACA 	31
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAA 	1
--------------------------------------------------------------------------------------TCAAGAAGGTGCATGAACAAG 	1
--------------------------------------------------------------------------------------TCAAGAAGGTGCATGAACA 	2

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM415785 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
----------------------TCAAGCACCAGCTCGAAGAAGC 	1
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	9

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM366870 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
----------------------------ACCAGCTCGAAGAAGCTTAGCT 	4
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	50
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAAC 	1

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM366869 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	23

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Arabidopsis thaliana GSM366866 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
---------------------TTCAAGCACCAGCTCGAAGAA 	1
----------------------------ACCAGCTCGAAGAAGCTTAGCT 	3
-----------------------------------------------------------------------------CTATGCTTCTCAAGAAGGTGC 	1
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	466
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAA 	4
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAAC 	1

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Arabidopsis thaliana GSM518432-13544 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
----------------------TCAAGCACCAGCTCGAAGAAGC 	1
----------------------------ACCAGCTCGAAGAAGCTTAGCT 	2
-----------------------------------------------------------------------------CTATGCTTCTCAAGAAGGTGC 	1
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	266
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAACA 	1
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAAC 	1
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAACA 	4
-------------------------------------------------------------------------------------CTCAAGAAGGTGCATGAAC 	2

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Arabidopsis thaliana GSM277608 TTCTCAAGAAGGTGCATGAAC TCAAGCACCAGCTCGAAGAAGC down 4 1


Secondary structure

CTAGTTGATTCCATCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGATGTATATTTTGA
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAAC 	5
-----------------------------------------------------------------------------------TTCTCAAGAAGGTGCATGAACA 	1
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAAC 	1
------------------------------------------------------------------------------------TCTCAAGAAGGTGCATGAACA 	1

Overlaps with: MNEST047847
Overlaps with miRBase pre-miRNAs: ath-MIR825
HuntMi prediction: true miRNA