miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCTTCGTGAATATCTGGCAT

selected species: Arabidopsis thaliana



5 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Arabidopsis thaliana GSM415785 TTCTTCGTGAATATCTGGCAT ATCAGATATTTCACGAAGATAT down 2 1


Secondary structure

TTCAAGAAAAATTCTTCAAGATATCAGATATTTCACGAAGATATCTGCATAACAGCTACGAGGAAATTGTGATTTTATCGTTTCACAAACATCAACAGCTCCATGGATCGTTATGGACGGATAAATCACAATCACTATCCTTTTTCTAGCAGCTGTTGAGCAGGTTTCTTCGTGAATATCTGGCATTTTGGTGGATTTTACAGTT
----------------------------TATTTCACGAAGATATCTGCAT 	1
-----------------------------------CGAAGATATCTGCATAACAGC 	2
--------------------------------------------CTGCATAACAGCTACGAGGAAA 	1
---------------------------------------------TGCATAACAGCTACGAGGAAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGT 	6
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCATT 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCAT 	3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATTTT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATT 	26
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCAT 	136
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATTTT 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATT 	95
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCAT 	485
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCA 	2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGTGAATATCTGGCATTT 	1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGTGAATATCTGGCATT 	4
----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGTGAATATCTGGCAT 	4
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGAATATCTGGCATT 	1

Overlaps with: MNEST040135 MNEST040136
Overlaps with miRBase pre-miRNAs: ath-MIR780
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Arabidopsis thaliana GSM366870 TTCTTCGTGAATATCTGGCAT ATCAGATATTTCACGAAGATAT down 2 1


Secondary structure

TTCAAGAAAAATTCTTCAAGATATCAGATATTTCACGAAGATATCTGCATAACAGCTACGAGGAAATTGTGATTTTATCGTTTCACAAACATCAACAGCTCCATGGATCGTTATGGACGGATAAATCACAATCACTATCCTTTTTCTAGCAGCTGTTGAGCAGGTTTCTTCGTGAATATCTGGCATTTTGGTGGATTTTACAGTT
--------------------------------------------CTGCATAACAGCTACGAGGA 	1
------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGG 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATT 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCAT 	5

Overlaps with: MNEST040135 MNEST040136
Overlaps with miRBase pre-miRNAs: ath-MIR780
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Arabidopsis thaliana GSM304283 TTCTTCGTGAATATCTGGCAT ATCAGATATTTCACGAAGATAT down 2 1


Secondary structure

TTCAAGAAAAATTCTTCAAGATATCAGATATTTCACGAAGATATCTGCATAACAGCTACGAGGAAATTGTGATTTTATCGTTTCACAAACATCAACAGCTCCATGGATCGTTATGGACGGATAAATCACAATCACTATCCTTTTTCTAGCAGCTGTTGAGCAGGTTTCTTCGTGAATATCTGGCATTTTGGTGGATTTTACAGTT
-------------------------------------------TCTGCATAACAGCTACGAGGA 	2
-----------------------------------------------------------------------------------------------------------------------------------------------TTCTAGCAGCTGTTGAGCAGG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGG 	4
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCAT 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCAT 	14
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCA 	4
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGC 	4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATCTGGCATTTTGGTGGA 	2

Overlaps with: MNEST040135 MNEST040136
Overlaps with miRBase pre-miRNAs: ath-MIR780
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Arabidopsis thaliana GSM304285 TTCTTCGTGAATATCTGGCAT ATCAGATATTTCACGAAGATAT down 2 1


Secondary structure

TTCAAGAAAAATTCTTCAAGATATCAGATATTTCACGAAGATATCTGCATAACAGCTACGAGGAAATTGTGATTTTATCGTTTCACAAACATCAACAGCTCCATGGATCGTTATGGACGGATAAATCACAATCACTATCCTTTTTCTAGCAGCTGTTGAGCAGGTTTCTTCGTGAATATCTGGCATTTTGGTGGATTTTACAGTT
---------------------------------------------TGCATAACAGCTACGAGGAA 	1
------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGG 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCATT 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGG 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATT 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCAT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCA 	1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGC 	3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATT 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCAT 	17
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCA 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGC 	2

Overlaps with: MNEST040135 MNEST040136
Overlaps with miRBase pre-miRNAs: ath-MIR780
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Arabidopsis thaliana GSM518432-13544 TTCTTCGTGAATATCTGGCAT ATCAGATATTTCACGAAGATAT down 2 1


Secondary structure

TTCAAGAAAAATTCTTCAAGATATCAGATATTTCACGAAGATATCTGCATAACAGCTACGAGGAAATTGTGATTTTATCGTTTCACAAACATCAACAGCTCCATGGATCGTTATGGACGGATAAATCACAATCACTATCCTTTTTCTAGCAGCTGTTGAGCAGGTTTCTTCGTGAATATCTGGCATTTTGGTGGATTTTACAGTT
-----------------------------------------TATCTGCATAACAGCTACGAGG 	1
--------------------------------------------CTGCATAACAGCTACGAGGA 	1
--------------------------------------------CTGCATAACAGCTACGAGGAA 	1
-----------------------------------------------------------------------------------------------------------------------------------------------TTCTAGCAGCTGTTGAGCAGG 	3
------------------------------------------------------------------------------------------------------------------------------------------------TCTAGCAGCTGTTGAGCAGGT 	5
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGG 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCA 	2
------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTTCTTCGTGAATATCTGGCAT 	5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATTT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCATT 	2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTGAATATCTGGCAT 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCAT 	27
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATTTT 	9
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATT 	5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCATTT 	10
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCGTGAATATCTGGCA 	1

Overlaps with: MNEST040135 MNEST040136
Overlaps with miRBase pre-miRNAs: ath-MIR780
HuntMi prediction: true miRNA