miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



Please select library, species and/or miRNA sequence.


selected mature miRNA sequence: TTCTTGCACTCCTCCATCTCT

selected species: Physcomitrella patens



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TTCTTGCACTCCTCCATCTCT AGATTGACGAGTGCAAGAAGA up 2 0


Secondary structure

CGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTT
-----------TTCTTGCACTCCTCCATCTCTC 	2
-----------TTCTTGCACTCCTCCATCTCT 	399
------------TCTTGCACTCCTCCATCTCTC 	1
------------TCTTGCACTCCTCCATCTCT 	3
-----------------CACTCCTCCATCTCTCGCATC 	4
--------------------TCCTCCATCTCTCGCATCTCT 	2
-------------------------------------------------------------------------------------CGGATTAGGGATCGTCTACACC 	1
------------------------------------------------------------------------------------------------TCGTCTACACCAGATAAGCCA 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	95
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAAG 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	203
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACGAGTGCAAGAAGACCC 	1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGAGTGCAAGAAGACCCT 	1


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313214 TTCTTGCACTCCTCCATCTCT AGATTGACGAGTGCAAGAAGA up 2 0


Secondary structure

CGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCTCCAACACCTGCACAGCGGCGGTCTTGTCCGGATTAGGGATCGTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCCCAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTT
----------CTTCTTGCACTCCTCCATCTCT 	1
-----------TTCTTGCACTCCTCCATCTCT 	398
-----------TTCTTGCACTCCTCCATCTC 	3
-----------TTCTTGCACTCCTCCATCT 	3
-----------TTCTTGCACTCCTCCATCTCTC 	1
------------TCTTGCACTCCTCCATCTCTC 	7
------------TCTTGCACTCCTCCATCTCT 	2
-------------CTTGCACTCCTCCATCTCT 	2
-----------------CACTCCTCCATCTCTCGCATC 	1
------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACGGTTGCTGCGTTTTCC 	1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTTCGGATACAACCCTGCC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGAGAGATTGACGAGTGCA 	32
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAA 	3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTGACGAGTGCAAGAAG 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAG 	3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGAC 	1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAA 	2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTGACGAGTGCAAGAAGA 	171
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGACGAGTGCAAGAAGA 	1


Overlaps with: MNEST039722 MNEST039723
Overlaps with miRBase pre-miRNAs: ppt-MIR2083
HuntMi prediction: not a miRNA