miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTGAACTTTCTAAGGAATAG

selected species: Ciona intestinalis



2 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Ciona intestinalis GSM343282-14442 TTGAACTTTCTAAGGAATAGG TAATTCTTGAAAGTCAACA up 1 2


Secondary structure

TGGTCAAGCGGCAAGCGAGTATTGAACTTTCTAAGGAATAGGTTTAAACCAAAACTACAACCTAATTCTTGAAAGTCAACATTCCCTCCCGCACAAACA
---------------------TTGAACTTTCTAAGGAATAGGT 	28
---------------------TTGAACTTTCTAAGGAATAGG 	41
---------------------TTGAACTTTCTAAGGAATA 	1
----------------------TGAACTTTCTAAGGAATAGGTT 	2


Overlaps with: MNEST024860 MNEST024861
Overlaps with miRBase pre-miRNAs: cin-mir-1502a cin-mir-4007
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Ciona intestinalis GSM343286 TTGAACTTTCTAAGGAATAG AATTCTTGAAAGTCAACA up 1 2


Secondary structure

TGGTCAAGCGGCAAGCGAGTATTGAACTTTCTAAGGAATAGGTTTAAACCAAAACTACAACCTAATTCTTGAAAGTCAACATTCCCTCCCGCACAAACA
TGGTCAAGCGGCAAGCGAGT 	21
TGGTCAAGCGGCAAGCGAG 	2
-GGTCAAGCGGCAAGCGAGTA 	801
-GGTCAAGCGGCAAGCGAGT 	25
--GTCAAGCGGCAAGCGAGTA 	2
---------------------TTGAACTTTCTAAGGAATAGGTTT 	3
---------------------TTGAACTTTCTAAGGAATAGGTT 	1
---------------------TTGAACTTTCTAAGGAATAGG 	8
---------------------TTGAACTTTCTAAGGAATAG 	2379
---------------------TTGAACTTTCTAAGGAATA 	40
----------------------TGAACTTTCTAAGGAATAGG 	122
----------------------TGAACTTTCTAAGGAATAG 	4
-----------------------GAACTTTCTAAGGAATAGGT 	2
------------------------AACTTTCTAAGGAATAGGTT 	1
----------------------------------------------------------AACCTAATTCTTGAAAGTCA 	1
-----------------------------------------------------------ACCTAATTCTTGAAAGTCAA 	10
------------------------------------------------------------CCTAATTCTTGAAAGTCAAC 	34


Overlaps with: MNEST024860 MNEST024861
Overlaps with miRBase pre-miRNAs: cin-mir-1502a cin-mir-4007
HuntMi prediction: true miRNA