miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTGAAGGAGTTCATTGGTATA

selected species: Physcomitrella patens



9 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Physcomitrella patens GSM115097 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
---------------------------------GCATTCTTGTGCTAGTAAACT 	1
-----------------------------------------GTGCTAGTAAACTCCTTCATGC 	1
------------------------------------------TGCTAGTAAACTCCTTCATGC 	240
------------------------------------------TGCTAGTAAACTCCTTCATG 	2
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTGC 	1
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	1412
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	15
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	8
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATAT 	4
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	4
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTAT 	1

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Physcomitrella patens GSM313212 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
------------------------------------------TGCTAGTAAACTCCTTCATG 	2
------------------------------------------TGCTAGTAAACTCCTTCATGC 	43
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTATA 	1
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATATA 	1
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	4
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	5
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	597
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	19
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	3
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	1

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Physcomitrella patens GSM115095 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
------------------------------------------TGCTAGTAAACTCCTTCATGC 	61
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	687
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	3
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	3
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	4

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Physcomitrella patens GSM313213 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
------------------------------------------TGCTAGTAAACTCCTTCATG 	1
------------------------------------------TGCTAGTAAACTCCTTCATGCA 	1
------------------------------------------TGCTAGTAAACTCCTTCATGC 	25
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCT 	1
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTATA 	1
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	16
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	2
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	7
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	638
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	1
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	2

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
5 Physcomitrella patens GSM313215 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
----------------------------------CATTCTTGTGCTAGTAAACTCC 	1
------------------------------------------TGCTAGTAAACTCCTTCATG 	3
------------------------------------------TGCTAGTAAACTCCTTCATGCA 	5
------------------------------------------TGCTAGTAAACTCCTTCATGC 	658
-------------------------------------------GCTAGTAAACTCCTTCATGC 	8
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTG 	1
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTATA 	10
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	35
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	7
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	2220
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	4
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	15
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	1
----------------------------------------------------------------------------------------------GTTCATTGGTATATAAATGC 	1

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
6 Physcomitrella patens GSM115096 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
-----------------------------------------GTGCTAGTAAACTCCTTCATGC 	1
------------------------------------------TGCTAGTAAACTCCTTCATGCA 	2
------------------------------------------TGCTAGTAAACTCCTTCATGC 	498
------------------------------------------TGCTAGTAAACTCCTTCAT 	4
------------------------------------------TGCTAGTAAACTCCTTCATG 	12
-------------------------------------------GCTAGTAAACTCCTTCATGC 	1
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	3762
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	25
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	31
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	11
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATAT 	3
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	17
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	1

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
7 Physcomitrella patens GSM313216 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
-----------------------------------------GTGCTAGTAAACTCCTTCATGC 	2
------------------------------------------TGCTAGTAAACTCCTTCATG 	10
------------------------------------------TGCTAGTAAACTCCTTCATGCA 	3
------------------------------------------TGCTAGTAAACTCCTTCATGC 	459
-------------------------------------------GCTAGTAAACTCCTTCATGC 	8
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTG 	1
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTATA 	14
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	20
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	1
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	23
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	1844
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	4
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	3

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
8 Physcomitrella patens GSM313214 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
----------------------------------CATTCTTGTGCTAGTAAACTCC 	1
------------------------------------------TGCTAGTAAACTCCTTCATG 	14
------------------------------------------TGCTAGTAAACTCCTTCATGCA 	4
------------------------------------------TGCTAGTAAACTCCTTCATGC 	1350
-------------------------------------------GCTAGTAAACTCCTTCATGC 	14
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTGC 	1
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTG 	1
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTAT 	1
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTATA 	11
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	19
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	2331
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	34
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	9
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	13
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	3

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
9 Physcomitrella patens GSM313217 TTGAAGGAGTTCATTGGTATA TGCTAGTAAACTCCTTCATGC down 2 0


Secondary structure

GTTGATCACACACGACATAGCTGGTTGTTGTGGGCATTCTTGTGCTAGTAAACTCCTTCATGCAGAAGTGCGCTTCTAGCACCTGCTTGAAGGAGTTCATTGGTATATAAATGCCCACAACATGATGACCGATTAACGTGAGCGAC
------------------------------------------TGCTAGTAAACTCCTTCATG 	11
------------------------------------------TGCTAGTAAACTCCTTCATGCA 	3
------------------------------------------TGCTAGTAAACTCCTTCAT 	1
------------------------------------------TGCTAGTAAACTCCTTCATGC 	440
-------------------------------------------GCTAGTAAACTCCTTCATGC 	4
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTGC 	1
---------------------------------------------------------------AGAAGTGCGCTTCTAGCACCTG 	3
-------------------------------------------------------------------------------------CTTGAAGGAGTTCATTGGTATA 	15
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATA 	1807
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTA 	3
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTATAT 	15
--------------------------------------------------------------------------------------TTGAAGGAGTTCATTGGTAT 	21
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTATA 	11
---------------------------------------------------------------------------------------TGAAGGAGTTCATTGGTAT 	1
----------------------------------------------------------------------------------------GAAGGAGTTCATTGGTATA 	2

Overlaps with: MNEST045984
Overlaps with miRBase pre-miRNAs: ppt-MIR1222a
HuntMi prediction: true miRNA