miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGACAGAAGATAGAGAGCAC

selected species: Solanum lycopersicum

4 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Solanum lycopersicum	GSM304986	TTGACAGAAGATAGAGAGCAC	GCTCTCTATGCTTCTGTCATCA	up	1	1

Secondary structure

AGGAAGAAAGAGTGATTATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGTGCTCTCTATGCTTCTGTCATCACCTTCACCTCTTTCGTAA
---------------------TTGACAGAAGATAGAGAGCACT 	1
---------------------TTGACAGAAGATAGAGAGCAC 	47
---------------------TTGACAGAAGATAGAGAGCA 	7
---------------------TTGACAGAAGATAGAGAGC 	9
-----------------------------------------------------------------------------------------------ATTTGTGCTCTCTATGCTTC 	1
-------------------------------------------------------------------------------------------------TTGTGCTCTCTATGCTTCTGTC 	6
-----------------------------------------------------------------------------------------------------GCTCTCTATGCTTCTGTCATC 	2

Overlaps with: MNEST002631
Overlaps with miRBase pre-miRNAs: sly-MIR156a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Solanum lycopersicum	GSM304986	TTGACAGAAGATAGAGAGCAC	GCTCTCTATTCTTCTGTCATCA	up	1	1

Secondary structure

ATTATTTCAAAGAGAGCAGGAAAGTATTGGGTGAGATATTGTTGACAGAAGATAGAGAGCACGAATAATGAGGTGCTAATTGGAAGCTGCACCTTAATTCTTTGTGCTCTCTATTCTTCTGTCATCATCTTCAGTCCCTCCCCGACCCTCTCTACCTTAATTTAT
-----------------------------------------TTGACAGAAGATAGAGAGCAC 	47
-----------------------------------------TTGACAGAAGATAGAGAGCA 	7
-----------------------------------------TTGACAGAAGATAGAGAGC 	9

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Solanum lycopersicum	GSM304986	TTGACAGAAGATAGAGAGCAC	GCTCTTTATTCTTCTGTCATCA	up	1	1

Secondary structure

TCGATCGTATATGTTAAAAGAGGAGGTGGTAGGAGATGTTGTTGACAGAAGATAGAGAGCACAGATGATAAAGTGCATGGAAATTGTCTGCACCTTACTCCTTTGTGCTCTTTATTCTTCTGTCATCATCATTAATCCCACCTTTTTTTTTGATATTTTTGTATTG
-----------------------------------------TTGACAGAAGATAGAGAGCACA 	2
-----------------------------------------TTGACAGAAGATAGAGAGCAC 	47
-----------------------------------------TTGACAGAAGATAGAGAGCA 	7
-----------------------------------------TTGACAGAAGATAGAGAGC 	9

HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Solanum lycopersicum	GSM304986	TTGACAGAAGATAGAGAGCAC	GCTCTCTATGCTTCCGTCATCC	up	2	1

Secondary structure

AAAATGGAATGGGTGATATTGTTGACAGAAGATAGAGAGCACATATGATGGAATGCTGCTGCTGCTGCTGCTAAATCTGGAGAGTCTTAACAATAAAAAAAAGCATTTCACTTCATTTGTGCTCTCTATGCTTCCGTCATCCCTTTCATCCTCTTCTCCT
---------------------TTGACAGAAGATAGAGAGCACA 	2
---------------------TTGACAGAAGATAGAGAGCAC 	47
---------------------TTGACAGAAGATAGAGAGCA 	7
---------------------TTGACAGAAGATAGAGAGC 	9
------------------------------------------------------------------------------------------------------------------ATTTGTGCTCTCTATGCTTC 	1
-------------------------------------------------------------------------------------------------------------------TTTGTGCTCTCTATGCTTCCGT 	1
-------------------------------------------------------------------------------------------------------------------TTTGTGCTCTCTATGCTTCCG 	1
--------------------------------------------------------------------------------------------------------------------TTGTGCTCTCTATGCTTCCGTC 	1
--------------------------------------------------------------------------------------------------------------------TTGTGCTCTCTATGCTTCCG 	1
------------------------------------------------------------------------------------------------------------------------GCTCTCTATGCTTCCGTCATC 	1

HuntMi prediction: true miRNA