miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGACTTTCAAGAATTAGGT

selected species: Ciona intestinalis

3 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Ciona intestinalis	GSM343283-14443	TTGACTTTCAAGAATTAGGTT	CCTATTCCTTAGAAAGTTCAATA	up	3	2

Secondary structure

CTTTTAGAGGTTTGTCGTTGTTGTTTGTGCGGGAGGGAATGTTGACTTTCAAGAATTAGGTTGTAGTTTTGGTTTAAACCTATTCCTTAGAAAGTTCAATACTCGCTTGCCGCTTGACCAATGAAGACGGGGCAGTTGC
-----------------------------------------TTGACTTTCAAGAATTAGGTT 	7
-----------------------------------------TTGACTTTCAAGAATTAGG 	2

Overlaps with: MNEST024860 MNEST024861
Overlaps with miRBase pre-miRNAs: cin-mir-1502a cin-mir-4007
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Ciona intestinalis	GSM343282-14442	TTGACTTTCAAGAATTAGGTT	CCTATTCCTTAGAAAGTTCAATA	up	3	2

Secondary structure

CTTTTAGAGGTTTGTCGTTGTTGTTTGTGCGGGAGGGAATGTTGACTTTCAAGAATTAGGTTGTAGTTTTGGTTTAAACCTATTCCTTAGAAAGTTCAATACTCGCTTGCCGCTTGACCAATGAAGACGGGGCAGTTGC
-----------------------------------------TTGACTTTCAAGAATTAGGTT 	5
-----------------------------------------TTGACTTTCAAGAATTAGG 	1
------------------------------------------TGACTTTCAAGAATTAGGTTG 	1

Overlaps with: MNEST024860 MNEST024861
Overlaps with miRBase pre-miRNAs: cin-mir-1502a cin-mir-4007
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Ciona intestinalis	GSM343286	TTGACTTTCAAGAATTAGGT	CTATTCCTTAGAAAGTTCAATA	up	3	2

Secondary structure

TTTGTCGTTGTTGTTTGTGCGGGAGGGAATGTTGACTTTCAAGAATTAGGTTGTAGTTTTGGTTTAAACCTATTCCTTAGAAAGTTCAATACTCGCTTGCCGCTTGACCAATGAAGACG
-------------------------------TTGACTTTCAAGAATTAGGT 	22
-------------------------------TTGACTTTCAAGAATTAGG 	1
--------------------------------TGACTTTCAAGAATTAGGTT 	2

Overlaps with: MNEST024860 MNEST024861
Overlaps with miRBase pre-miRNAs: cin-mir-1502a cin-mir-4007
HuntMi prediction: true miRNA