miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions

Please select library, species and/or miRNA sequence.

selected mature miRNA sequence: TTGAGCCGCGCCAATATCACA

selected species: Physcomitrella patens

9 records found

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
1	Physcomitrella patens	GSM313212	TTGAGCCGCGCCAATATCACA	TGATATTGGTGGCGCTCAATC	down	2	0

Secondary structure

TCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTT
-----------GTGATATTGGTGGCGCTCAA 	1
-----------GTGATATTGGTGGCGCTCAAT 	11
------------TGATATTGGTGGCGCTCAAT 	5
------------TGATATTGGTGGCGCTCAATC 	12
------------TGATATTGGTGGCGCTCAA 	1
-------------GATATTGGTGGCGCTCAATC 	1
-----------------------------------------------------------TTGCCATCAGATTGAGCCGCGC 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	48
----------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	2
----------------------------------------------------------------------TTGAGCCGCGCCAATATCA 	1
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	6
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	19
-----------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1
-------------------------------------------------------------------------AGCCGCGCCAATATCACAT 	1

Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
2	Physcomitrella patens	GSM313212	TTGAGCCGCGCCAATATCACA	TGTTATTGGGCCCGCTCAATC	down	2	2

Secondary structure

TTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAA
------------------------------TGTGTTATTGGGCCCGCTCAAT 	1
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	48
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	2
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCA 	1
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	6
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	19
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1
----------------------------------------------------------------------------------------------AGCCGCGCCAATATCACAT 	1

Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
3	Physcomitrella patens	GSM313213	TTGAGCCGCGCCAATATCACA	TGATATTGGTGGCGCTCAATC	down	2	0

Secondary structure

TCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTT
-----------GTGATATTGGTGGCGCTCAAT 	12
------------TGATATTGGTGGCGCTCAAT 	1
------------TGATATTGGTGGCGCTCAATC 	21
----------------------------------------------------------------------TTGAGCCGCGCCAATATCACAT 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCA 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	40
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	1
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	24
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	6

Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
4	Physcomitrella patens	GSM313213	TTGAGCCGCGCCAATATCACA	TGTTATTGGGCCCGCTCAATC	down	2	2

Secondary structure

TTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAA
-------------------------------GTGTTATTGGGCCCGCTCAAT 	4
--------------------------------TGTTATTGGGCCCGCTCAATC 	1
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACAT 	1
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCA 	1
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	1
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	40
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	1
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	24
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	6

Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
5	Physcomitrella patens	GSM313215	TTGAGCCGCGCCAATATCACA	TGTTATTGGGCCCGCTCAATC	down	2	2

Secondary structure

TTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAA
------------------------------TGTGTTATTGGGCCCGCTCAAT 	1
-------------------------------GTGTTATTGGGCCCGCTCAAT 	4
--------------------------------TGTTATTGGGCCCGCTCAATC 	2
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	28
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	1
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACATC 	1
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	16
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	2

Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
6	Physcomitrella patens	GSM313216	TTGAGCCGCGCCAATATCACA	TGATATTGGTGGCGCTCAATC	down	2	0

Secondary structure

TCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTT
----------TGTGATATTGGTGGCGCTCA 	1
-----------GTGATATTGGTGGCGCTCAAT 	10
------------TGATATTGGTGGCGCTCAATC 	5
------------TGATATTGGTGGCGCTCAAT 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	21
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	4
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	8
------------------------------------------------------------------------GAGCCGCGCCAATATCACA 	1

Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
7	Physcomitrella patens	GSM313216	TTGAGCCGCGCCAATATCACA	TGTTATTGGGCCCGCTCAATC	down	2	2

Secondary structure

TTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAA
-------------------------------GTGTTATTGGGCCCGCTCAAT 	2
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	21
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	4
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	8
---------------------------------------------------------------------------------------------GAGCCGCGCCAATATCACA 	1

Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
8	Physcomitrella patens	GSM313217	TTGAGCCGCGCCAATATCACA	TGATATTGGTGGCGCTCAATC	down	2	0

Secondary structure

TCTTTAGGCATGTGATATTGGTGGCGCTCAATCAGATGACCATGCCTGTGATGCTGGCGTTGCCATCAGATTGAGCCGCGCCAATATCACATCCTTACTT
-----------GTGATATTGGTGGCGCTCAAT 	7
------------TGATATTGGTGGCGCTCAATC 	4
------------TGATATTGGTGGCGCTCAAT 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCACAT 	2
----------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	2
----------------------------------------------------------------------TTGAGCCGCGCCAATATCA 	1
----------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	24
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	2
-----------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	11
-----------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1

Overlaps with: MNEST039478 MNEST051382
Overlaps with miRBase pre-miRNAs: ppt-MIR171a
HuntMi prediction: true miRNA

#	species	library	miRNA	miRNA*	arm	mismatches	bulges
9	Physcomitrella patens	GSM313217	TTGAGCCGCGCCAATATCACA	TGTTATTGGGCCCGCTCAATC	down	2	2

Secondary structure

TTTGTCTGGAAGGGAAGTATTCTTGAGGCATGTGTTATTGGGCCCGCTCAATCAGATGTCTTTTCCAGCAACGGCTGGTATTGTCCTCAGATTGAGCCGCGCCAATATCACATCCTTCCTTGATTGCTTCTGTTTTCTCAA
------------------------------TGTGTTATTGGGCCCGCTCAAT 	2
-------------------------------GTGTTATTGGGCCCGCTCAA 	1
-------------------------------GTGTTATTGGGCCCGCTCAAT 	4
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACAT 	2
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCAC 	2
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCA 	1
-------------------------------------------------------------------------------------------TTGAGCCGCGCCAATATCACA 	24
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACA 	2
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCACAT 	11
--------------------------------------------------------------------------------------------TGAGCCGCGCCAATATCAC 	1

Overlaps with: MNEST039479 MNEST051383
Overlaps with miRBase pre-miRNAs: ppt-MIR171b
HuntMi prediction: true miRNA