miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: deep sequencing predictions



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selected mature miRNA sequence: TTGCATAGTCACAAAAATGAGC

selected species: Danio rerio



4 records found  

#specieslibrarymiRNAmiRNA*armmismatchesbulges
1 Danio rerio GSM540644 TTGCATAGTCACAAAAATGAGC CATTTTTGTGGTTTGCAGCT down 3 1


Secondary structure

CTCAACCTCTCTTTCTGAGAGCGATGGAGCGCGGTAGCGAGGTATTGCACAGCTGTCTGTGTCATTTTTGTGGTTTGCAGCTAGTAGTCTGGTTCCAGTTGCATAGTCACAAAAATGAGCACAGACAGATGTGACTGCAGCAACGCTGATGAAACGCTCCATCGCCAAACTCTGTCCAT
-----------------------------------------------------------TGTCATTTTTGTGGTTTGCAGC 	1
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGCT 	1
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCTAG 	1
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCT 	1
-------------------------------------------------------------------------------------------------GTTGCATAGTCACAAAAATGAGC 	1
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCA 	5
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGC 	19
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAG 	5
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGA 	2
--------------------------------------------------------------------------------------------------------------------------AGACAGATGTGACTGCAGCAACG 	1

Overlaps with: MNEST034325
Overlaps with miRBase pre-miRNAs: dre-mir-153b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
2 Danio rerio GSM540645 TTGCATAGTCACAAAAATGAGC CATTTTTGTGGTTTGCAGCT down 3 1


Secondary structure

CTCAACCTCTCTTTCTGAGAGCGATGGAGCGCGGTAGCGAGGTATTGCACAGCTGTCTGTGTCATTTTTGTGGTTTGCAGCTAGTAGTCTGGTTCCAGTTGCATAGTCACAAAAATGAGCACAGACAGATGTGACTGCAGCAACGCTGATGAAACGCTCCATCGCCAAACTCTGTCCAT
-----------------------------------------------------------TGTCATTTTTGTGGTTTGCAGC 	1
-----------------------------------------------------------TGTCATTTTTGTGGTTTGCAG 	1
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGCTA 	1
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGCT 	12
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGC 	10
------------------------------------------------------------GTCATTTTTGTGGTTTGCAG 	9
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCT 	4
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGC 	2
-------------------------------------------------------------TCATTTTTGTGGTTTGCAG 	1
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCAC 	6
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGC 	246
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCA 	50
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAG 	23
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGA 	3
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGCA 	2
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGC 	3
--------------------------------------------------------------------------------------------------------------------------AGACAGATGTGACTGCAGCAA 	1
--------------------------------------------------------------------------------------------------------------------------AGACAGATGTGACTGCAGC 	1

Overlaps with: MNEST034325
Overlaps with miRBase pre-miRNAs: dre-mir-153b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
3 Danio rerio GSM540643 TTGCATAGTCACAAAAATGAGC CATTTTTGTGGTTTGCAGCT down 3 1


Secondary structure

CTCAACCTCTCTTTCTGAGAGCGATGGAGCGCGGTAGCGAGGTATTGCACAGCTGTCTGTGTCATTTTTGTGGTTTGCAGCTAGTAGTCTGGTTCCAGTTGCATAGTCACAAAAATGAGCACAGACAGATGTGACTGCAGCAACGCTGATGAAACGCTCCATCGCCAAACTCTGTCCAT
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGCT 	13
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCTA 	1
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCT 	2
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCACA 	1
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCAC 	29
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGC 	148
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCA 	117
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAG 	4
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGCAC 	4
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGCA 	5

Overlaps with: MNEST034325
Overlaps with miRBase pre-miRNAs: dre-mir-153b
HuntMi prediction: true miRNA



#specieslibrarymiRNAmiRNA*armmismatchesbulges
4 Danio rerio GSM540646 TTGCATAGTCACAAAAATGAGC CATTTTTGTGGTTTGCAGCT down 3 1


Secondary structure

CTCAACCTCTCTTTCTGAGAGCGATGGAGCGCGGTAGCGAGGTATTGCACAGCTGTCTGTGTCATTTTTGTGGTTTGCAGCTAGTAGTCTGGTTCCAGTTGCATAGTCACAAAAATGAGCACAGACAGATGTGACTGCAGCAACGCTGATGAAACGCTCCATCGCCAAACTCTGTCCAT
-----------------------------------------------------------TGTCATTTTTGTGGTTTGCAGCT 	1
-----------------------------------------------------------TGTCATTTTTGTGGTTTGCAG 	7
-----------------------------------------------------------TGTCATTTTTGTGGTTTGCAGC 	11
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGCTA 	5
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGC 	150
------------------------------------------------------------GTCATTTTTGTGGTTTGCAGCT 	147
------------------------------------------------------------GTCATTTTTGTGGTTTGCAG 	57
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCTAG 	1
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCTA 	1
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGCT 	29
-------------------------------------------------------------TCATTTTTGTGGTTTGCAGC 	10
-------------------------------------------------------------TCATTTTTGTGGTTTGCAG 	3
-------------------------------------------------------------------------------------------------GTTGCATAGTCACAAAAATGAGC 	1
-------------------------------------------------------------------------------------------------GTTGCATAGTCACAAAAATG 	1
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCACA 	4
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCAC 	105
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATG 	7
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGCA 	665
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAGC 	2266
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGAG 	133
--------------------------------------------------------------------------------------------------TTGCATAGTCACAAAAATGA 	15
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGCAC 	6
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGCA 	7
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAGC 	4
---------------------------------------------------------------------------------------------------TGCATAGTCACAAAAATGAG 	1
----------------------------------------------------------------------------------------------------GCATAGTCACAAAAATGAGC 	1
-----------------------------------------------------------------------------------------------------CATAGTCACAAAAATGAGCACAG 	1
--------------------------------------------------------------------------------------------------------------------------AGACAGATGTGACTGCAGCAA 	2
--------------------------------------------------------------------------------------------------------------------------AGACAGATGTGACTGCAGCA 	4
--------------------------------------------------------------------------------------------------------------------------AGACAGATGTGACTGCAGCAACGCTG 	3

Overlaps with: MNEST034325
Overlaps with miRBase pre-miRNAs: dre-mir-153b
HuntMi prediction: true miRNA